RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA951412", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 1 ✖

tax_clade 1

  • delta/epsilon subdivisions · 1 ✖

bioproject 1

  • PRJNA951412 · 1 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26645509 26645509 PRJNA951412_P_NODE_881_length_485_cov_1.898058_g796_i0 PRJNA951412 881 485 1.898058 9.2055813 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14 2013741 Bacteria Bacteria 45.8 0.0345   NR PKN56382.1 2013741 g796 i0 35.2 0.544329896907216 88 50 54.4 1 47 310 77 157 PKN56382.1 MAG: hypothetical protein CVU56_16470 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14] diamond 264 45.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;