RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA951412", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA951412 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11138431 11138431 PRJNA951412_P_NODE_2209_length_315_cov_1.115702_g2124_i0 PRJNA951412 2209 315 1.115702 3.5144613 Roseimicrobium sp. ORNL1 2711231 Bacteria Bacteria 58.4 6.34e-4   NTclustered gi|1815841271|gb|CP049143.1| 2711231 g2124 i0 100 3.01269841269841 31 0 10 0 58 88 2594584 2594554 Roseimicrobium sp. ORNL1 chromosome, complete genome blastn 949 58.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseimicrobium Roseimicrobium sp. ORNL1
18786569 18786569 PRJNA951412_P_NODE_5975_length_247_cov_0.890805_g5890_i0 PRJNA951412 5975 247 0.890805 2.20028835 Terrimicrobiaceae bacterium 2832348 Bacteria Bacteria 97.4 2.09e-21   NR MDD5199418.1 2832348 g5890 i0 75.4 1.62753036437247 65 16 78.9 0 51 245 56 120 MDD5199418.1 M48 family metallopeptidase [Terrimicrobiaceae bacterium] diamond 402 97.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Terrimicrobiia Terrimicrobiales Terrimicrobiaceae   Terrimicrobiaceae bacterium
18786577 18786577 PRJNA951412_P_NODE_6695_length_245_cov_0.906977_g6610_i0 PRJNA951412 6695 245 0.906977 2.22209365 Verrucomicrobiaceae 203557 Bacteria Bacteria 145 2.14e-38   NR WP_200269199.1 454153 g6610 i0 90.1 12.869387755102 81 8 99.2 0 243 1 715 795 WP_200269199.1 proline dehydrogenase family protein [Luteolibacter pohnpeiensis] diamond 3153 145 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter pohnpeiensis
25160949 25160949 PRJNA951412_P_NODE_4780_length_250_cov_1.480226_g4695_i0 PRJNA951412 4780 250 1.480226 3.700565 uncultured Terrimicrobium sp. 1758082 Bacteria Bacteria 462 8.83e-126   NTclustered gi|2518609723|gb|OR128325.1| 1758082 g4695 i0 100 99.888 250 0 100 0 1 250 290 41 Uncultured Terrimicrobium sp. clone 748a464ea190c92309074b4379e01e2e 16S ribosomal RNA gene, partial sequence blastn 24972 462 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Terrimicrobiia Terrimicrobiales Terrimicrobiaceae Terrimicrobium uncultured Terrimicrobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;