RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA951388" and tax_phylum = "Ciliophora"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 10 ✖

tax_clade 1

bioproject 1

  • PRJNA951388 · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4763114 4763114 PRJNA951388_S_NODE_5664_length_356_cov_2.233216_g5537_i0 PRJNA951388 5664 356 2.233216 7.95024896 Kentrophoros sp. 1 BS-2022 2930470 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.009   NTclustered gi|2261268989|emb|OX095830.1| 2930470 g5537 i0 100 0.415730337078652 29 0 8 0 1 29 10 38 Kentrophoros sp. 1 BS-2022 partial 18S rRNA gene, isolate SAMEA13863266, clone N10:18S_rRNA::TRINITY_DN246_c0_g1_i2:46-1672(+) blastn 148 54.7 1 Eukaryota Sar   Ciliophora Karyorelictea Protostomatida Kentrophoridae Kentrophoros Kentrophoros sp. 1 BS-2022
6037882 6037882 PRJNA951388_S_NODE_2465_length_480_cov_5.017199_g2338_i0 PRJNA951388 2465 480 5.017199 24.0825552 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.047   NTclustered gi|829187266|ref|XM_001033288.2| 312017 g2338 i0 100 0.0583333333333333 28 0 6 0 166 193 1611 1584 Tetrahymena thermophila SB210 hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
8587736 8587736 PRJNA951388_S_NODE_7467_length_311_cov_1.268908_g7340_i0 PRJNA951388 7467 311 1.268908 3.94630388 Trachelocercidae sp. 3 BS-2022 2930473 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.008   NTclustered gi|2261268975|emb|OX095823.1| 2930473 g7340 i0 100 0.183279742765273 29 0 9 0 1 29 9 37 Trachelocercidae sp. 3 BS-2022 partial 18S rRNA gene, isolate SAMEA13863269, clone N34:18S_rRNA::TRINITY_DN3988_c0_g1_i52:177-1769(-) blastn 57 54.7 1 Eukaryota Sar   Ciliophora Karyorelictea Protostomatida Trachelocercidae   Trachelocercidae sp. 3 BS-2022
25160893 25160893 PRJNA951388_S_NODE_8700_length_285_cov_2.537736_g8573_i0 PRJNA951388 8700 285 2.537736 7.2325476 Trachelocercidae sp. 3 BS-2022 2930473 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.007   NTclustered gi|2261268975|emb|OX095823.1| 2930473 g8573 i0 100 0.2 29 0 10 0 257 285 37 9 Trachelocercidae sp. 3 BS-2022 partial 18S rRNA gene, isolate SAMEA13863269, clone N34:18S_rRNA::TRINITY_DN3988_c0_g1_i52:177-1769(-) blastn 57 54.7 1 Eukaryota Sar   Ciliophora Karyorelictea Protostomatida Trachelocercidae   Trachelocercidae sp. 3 BS-2022
26993701 26993701 PRJNA951388_S_NODE_5782_length_352_cov_3.279570_g5655_i0 PRJNA951388 5782 352 3.27957 11.5440864 Halteria grandinella 5974 SAR_Eukaryotes SAR_Eukaryotes 47.4 0.00302   NR TNV83925.1 5974 g5655 i0 29.4 0.928977272727273 109 74 90.3 3 350 33 106 214 TNV83925.1 hypothetical protein FGO68_gene17221 [Halteria grandinella] diamond 327 47.4 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Halteriidae Halteria Halteria grandinella
28516565 28516565 PRJNA951388_S_NODE_4147_length_403_cov_2.515152_g4020_i0 PRJNA951388 4147 403 2.515152 10.13606256 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 99 1.3400000000000002e-21   NR XP_004024266.1 5932 g4020 i0 39.5 2.75434243176179 147 72 96.8 4 7 396 26 172 XP_004024266.1 methionyl-tRNA formyltransferase, putative [Ichthyophthirius multifiliis] diamond 1110 100 0.99 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
29242741 29242741 PRJNA951388_S_NODE_2289_length_490_cov_7.235012_g2163_i0 PRJNA951388 2289 490 7.235012 35.4515588 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 144 7.499999999999999e-38   NR TNV79671.1 5974 g2163 i0 53.7 15.9367346938776 136 61 83.3 1 484 77 273 406 TNV79671.1 hypothetical protein FGO68_gene6240 [Halteria grandinella] diamond 7809 145 0.993103448275862 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Halteriidae Halteria Halteria grandinella
30443018 30443018 PRJNA951388_S_NODE_7373_length_313_cov_2.320833_g7246_i0 PRJNA951388 7373 313 2.320833 7.26420729 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 76.6 7.67e-14   NR XP_001423282.1 5888 g7246 i0 37.9 1.97444089456869 103 64 98.7 0 2 310 254 356 XP_001423282.1 uncharacterized protein GSPATT00000319001 [Paramecium tetraurelia] diamond 618 76.6 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
30847076 30847076 PRJNA951388_S_NODE_3174_length_442_cov_5.766938_g3047_i0 PRJNA951388 3174 442 5.766938 25.48986596 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 112 5.88e-28   NR XP_001014252.1 312017 g3047 i0 41.7 0.943438914027149 139 80 93.7 1 2 415 54 192 XP_001014252.1 UMP-CMP kinase [Tetrahymena thermophila SB210] diamond 417 112 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
32530118 32530118 PRJNA951388_S_NODE_10019_length_261_cov_2.867021_g9892_i0 PRJNA951388 10019 261 2.867021 7.48292481 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 104 6.05e-25   NR CDW73994.1 5949 g9892 i0 57.6 12.5977011494253 85 36 97.7 0 6 260 28 112 CDW73994.1 protein kinase 2 [Stylonychia lemnae] diamond 3288 104 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;