RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA951388" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA951388 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3485409 3485409 PRJNA951388_S_NODE_12663_length_215_cov_4.471831_g12536_i0 PRJNA951388 12663 215 4.471831 9.61443665 Campylobacter novaezeelandiae 2267891 Bacteria Bacteria 52.8 0.019   NTclustered gi|2055832883|gb|CP076657.1| 2267891 g12536 i0 100 0.130232558139535 28 0 13 0 131 158 735360 735333 Campylobacter novaezeelandiae strain W441b chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter novaezeelandiae
8587734 8587734 PRJNA951388_S_NODE_6067_length_344_cov_4.066421_g5940_i0 PRJNA951388 6067 344 4.066421 13.98848824 Poseidonibacter lekithochrous 1904463 Bacteria Bacteria 52.8 0.033   NTclustered gi|1850313845|gb|CP054052.1| 1904463 g5940 i0 100 0.0813953488372093 28 0 8 0 133 160 2268423 2268450 Poseidonibacter lekithochrous strain DSM 100870 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Poseidonibacter Poseidonibacter lekithochrous
20061387 20061387 PRJNA951388_S_NODE_10036_length_261_cov_1.898936_g9909_i0 PRJNA951388 10036 261 1.898936 4.95622296 Campylobacter coli 195 Bacteria Bacteria 56.5 0.002   NTclustered gi|971160855|gb|CP013733.1| 195 g9909 i0 94.595 0.708812260536398 37 0 14 2 192 227 1220562 1220597 Campylobacter coli strain OR12 chromosome, complete genome blastn 185 56.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli
27183472 27183472 PRJNA951388_S_NODE_3442_length_430_cov_1.162465_g3315_i0 PRJNA951388 3442 430 1.162465 4.9985995 Helicobacter pylori 210 Bacteria Bacteria 43.5 0.00637   NR GAA8817385.1 210 g3315 i0 59 0.272093023255814 39 14 25.8 1 278 168 1 39 GAA8817385.1 hypothetical protein Kyoto149A_3650 [Helicobacter pylori] diamond 117 43.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;