RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA951388" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA951388 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28446993 28446993 PRJNA951388_S_NODE_426_length_863_cov_12.545570_g330_i0 PRJNA951388 426 863 12.54557 108.2682691 Gammaretrovirus murleu 3428959 Viruses Viruses 582 2.9499999999999996e-206   NR 8WUS_E 11801 g330 i0 99 8.97914252607184 287 3 99.8 0 3 863 31 317 8WUS_E Chain E, Gag-Pol polyprotein [Moloney murine leukemia virus] diamond 7749 582 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
30562441 30562441 PRJNA951388_S_NODE_6753_length_327_cov_1.862205_g6626_i0 PRJNA951388 6753 327 1.862205 6.08941035 Human immunodeficiency virus 1 11676 Viruses Viruses 48.9 6.4e-4   NR WAJ62392.1 11676 g6626 i0 35.4 3.00917431192661 82 43 75.2 1 44 289 330 401 WAJ62392.1 gag protein, partial [Human immunodeficiency virus 1] diamond 984 48.9 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
31257850 31257850 PRJNA951388_S_NODE_615_length_774_cov_11.880171_g507_i0 PRJNA951388 615 774 11.880171 91.95252354 Moloney murine leukemia virus 11801 Viruses Viruses 493 4.71e-159   NR NP_057933.2 11801 g507 i0 97.3 1 258 7 100 0 1 774 1076 1333 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 774 493 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;