RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA951388" and tax_clade = "Amoebozoa"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 9 ✖

bioproject 1

  • PRJNA951388 · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6366804 6366804 PRJNA951388_S_NODE_1745_length_536_cov_27.678186_g1623_i0 PRJNA951388 1745 536 27.678186 148.35507696 Heterostelium album PN5 2086695 Evosea other_Eukaryota 235 1.36e-75   NR XP_020430508.1 670386 g1623 i0 68.6 4.38246268656716 156 49 87.3 0 534 67 38 193 XP_020430508.1 Rho GTPase [Heterostelium album PN500] diamond 2349 235 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
18786501 18786501 PRJNA951388_S_NODE_7055_length_320_cov_3.230769_g6928_i0 PRJNA951388 7055 320 3.230769 10.3384608 Protostelium mycophagum 472931 Evosea other_Eukaryota 119 2.92e-22   NTclustered gi|262262923|gb|FJ766466.1| 472931 g6928 i0 79.213 48.503125 178 31 55 6 142 318 722 894 Protostelium mycophagum strain QE07-15-1 small subunit ribosomal RNA gene, partial sequence blastn 15521 119 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Protostelium Protostelium mycophagum
27151576 27151576 PRJNA951388_S_NODE_6962_length_322_cov_4.638554_g6835_i0 PRJNA951388 6962 322 4.638554 14.93614388 Cavenderia fasciculata 261658 Evosea other_Eukaryota 80.1 7.03e-15   NR XP_004355164.1 261658 g6835 i0 42.3 0.968944099378882 104 56 96.9 3 6 317 317 416 XP_004355164.1 uncharacterized protein DFA_07668 [Cavenderia fasciculata] diamond 312 80.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
27664189 27664189 PRJNA951388_S_NODE_3584_length_423_cov_5.342857_g3457_i0 PRJNA951388 3584 423 5.342857 22.60028511 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 73.6 2.5e-12   NR XP_003291214.1 5786 g3457 i0 37.1 5.61702127659574 105 66 74.5 0 404 90 191 295 XP_003291214.1 uncharacterized protein DICPUDRAFT_81895 [Dictyostelium purpureum] diamond 2376 73.9 0.995940460081191 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
27822074 27822074 PRJNA951388_S_NODE_9784_length_265_cov_1.203125_g9657_i0 PRJNA951388 9784 265 1.203125 3.18828125 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 42.7 0.0137   NR KYQ93011.1 361077 g9657 i0 34.4 2.24150943396226 64 34 72.5 2 66 257 27 82 KYQ93011.1 autophagy protein 10 [Tieghemostelium lacteum] diamond 594 43.1 0.990719257540603 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
28036432 28036432 PRJNA951388_S_NODE_2525_length_476_cov_11.578164_g2398_i0 PRJNA951388 2525 476 11.578164 55.11206064 Polysphondylium violaceum 133409 Evosea other_Eukaryota 94 6.25e-19   NR KAF2069394.1 133409 g2398 i0 45.9 0.850840336134454 135 57 82.6 6 3 395 672 794 KAF2069394.1 hypothetical protein CYY_009286 [Polysphondylium violaceum] diamond 405 94 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
30562442 30562442 PRJNA951388_S_NODE_7853_length_302_cov_1.122271_g7726_i0 PRJNA951388 7853 302 1.122271 3.38925842 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 132 1.89e-37   NR 1PRQ_A 5755 g7726 i0 62.6 0.983443708609272 99 37 98.3 0 2 298 9 107 1PRQ_A Chain A, PROFILIN IA [Acanthamoeba castellanii] diamond 297 132 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31106280 31106280 PRJNA951388_S_NODE_7315_length_314_cov_6.672199_g7188_i0 PRJNA951388 7315 314 6.672199 20.95070486 Entamoeba 5758 Evosea other_Eukaryota 59.7 2.95e-8   NR 5XCK_A 5759 g7188 i0 39.4 2.78980891719745 66 40 63.1 0 293 96 107 172 5XCK_A Chain A, Vacuolar protein sorting-associated protein 29 [Entamoeba histolytica] diamond 876 59.7 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
31384528 31384528 PRJNA951388_S_NODE_7896_length_301_cov_2.096491_g7769_i0 PRJNA951388 7896 301 2.096491 6.31043791 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 72.4 2.62e-12   NR PRP79145.1 1890364 g7769 i0 41.5 0.93687707641196 94 52 92.7 2 282 4 328 419 PRP79145.1 aspartic proteinase-like protein 2 isoform 2 [Planoprotostelium fungivorum] diamond 282 72.4 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;