RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA950981", tax_phylum = "Nitrospirota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Nitrospirota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA950981 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27727533 27727533 PRJNA950981_P_NODE_7504_length_362_cov_1.941176_g7328_i0 PRJNA950981 7504 362 1.941176 7.02705712 Pseudomonadati 3379134 Bacteria Bacteria 104 7.31e-26   NR NOS80444.1 70125 g7328 i0 47.6 9.59668508287293 105 55 87 0 359 45 46 150 NOS80444.1 Hsp20/alpha crystallin family protein [Nitrospira sp.] diamond 3474 105 0.990476190476191 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
30411627 30411627 PRJNA950981_P_NODE_18853_length_248_cov_0.891429_g18677_i0 PRJNA950981 18853 248 0.891429 2.21074392 Bacteria 2 Bacteria Bacteria 119 4.41e-31   NR MDN5942337.1 70125 g18677 i0 63.5 11.6733870967742 74 27 89.5 0 3 224 197 270 MDN5942337.1 glycine dehydrogenase (aminomethyl-transferring) [Nitrospira sp.] diamond 2895 120 0.991666666666667 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;