RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA950981", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA950981 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11466287 11466287 PRJNA950981_P_NODE_9509_length_328_cov_1.835294_g9333_i0 PRJNA950981 9509 328 1.835294 6.01976432 Desulfomonilaceae bacterium 3034167 Bacteria Bacteria 175 2.67e-51   NR HTY24326.1 3034167 g9333 i0 75.7 4.89329268292683 107 26 97.9 0 2 322 191 297 HTY24326.1 alkene reductase [Desulfomonilaceae bacterium] diamond 1605 175 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfomonilia Desulfomonilales Desulfomonilaceae   Desulfomonilaceae bacterium
25159997 25159997 PRJNA950981_P_NODE_18620_length_248_cov_1.782857_g18444_i0 PRJNA950981 18620 248 1.782857 4.42148536 Maridesulfovibrio sp. 2795000 Bacteria Bacteria 52.8 0.022   NTclustered gi|2621784475|emb|OY780933.1| 2795000 g18444 i0 100 0.112903225806452 28 0 11 0 111 138 3907097 3907124 MAG: Maridesulfovibrio sp. isolate 689ab4ac-13ae-4e01-b39b-c4f5232e5781 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Maridesulfovibrio Maridesulfovibrio sp.
25160015 25160015 PRJNA950981_P_NODE_7140_length_370_cov_0.912458_g6964_i0 PRJNA950981 7140 370 0.912458 3.3760946 Pseudomonadati 3379134 Bacteria Bacteria 214 2.1e-66   NR KQC13751.1 1735325 g6964 i0 79.7 28.8486486486486 123 25 99.7 0 369 1 126 248 KQC13751.1 MAG: GDP-mannose 4,6 dehydratase [Desulfuromonas sp. SDB] diamond 10674 214 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas sp. SDB
29267474 29267474 PRJNA950981_P_NODE_10589_length_313_cov_1.850000_g10413_i0 PRJNA950981 10589 313 1.85 5.7905 Desulfobacterales bacterium 2044940 Bacteria Bacteria 92.4 2.41e-21   NR UCD87303.1 2044940 g10413 i0 57.9 0.728434504792332 76 32 72.8 0 79 306 39 114 UCD87303.1 MAG: Hsp20/alpha crystallin family protein [Desulfobacterales bacterium] diamond 228 92.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;