RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA950981" and tax_kingdom = "Methanobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA950981 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27341803 27341803 PRJNA950981_P_NODE_13003_length_285_cov_1.839623_g12827_i0 PRJNA950981 13003 285 1.839623 5.24292555 Halobacteriota archaeon 3100168 Archaea Archaea 44.3 0.0172   NR MDY6966908.1 3100168 g12827 i0 50 0.378947368421053 36 18 37.9 0 215 108 490 525 MDY6966908.1 hypothetical protein [Halobacteriota archaeon] diamond 108 44.3 1 Archaea   Methanobacteriati Halobacteriota         Halobacteriota archaeon
30688931 30688931 PRJNA950981_P_NODE_10073_length_320_cov_1.578947_g9897_i0 PRJNA950981 10073 320 1.578947 5.0526304 Archaeoglobales archaeon 2250258 Archaea Archaea 114 7.18e-28   NR NHW89154.1 2250258 g9897 i0 53.7 3.065625 108 45 96.6 1 5 313 182 289 NHW89154.1 bis-aminopropyl spermidine synthase family protein [Archaeoglobales archaeon] diamond 981 114 1 Archaea   Methanobacteriati Methanobacteriota Archaeoglobi Archaeoglobales     Archaeoglobales archaeon
32744026 32744026 PRJNA950981_P_NODE_15780_length_259_cov_1.258065_g15604_i0 PRJNA950981 15780 259 1.258065 3.25838835 Methanococcus maripaludis 39152 Archaea Archaea 51.2 4.41e-5   NR WP_104837579.1 39152 g15604 i0 55.8 0.498069498069498 43 18 48.6 1 230 105 329 371 WP_104837579.1 MAC/perforin domain-containing protein [Methanococcus maripaludis] diamond 129 51.2 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanococcaceae Methanococcus Methanococcus maripaludis
32838266 32838266 PRJNA950981_P_NODE_12580_length_290_cov_1.069124_g12404_i0 PRJNA950981 12580 290 1.069124 3.1004596 Candidatus Poseidoniales archaeon 2163009 Archaea Archaea 78.6 2.83e-15   NR HIM32904.1 2163009 g12404 i0 41.7 2.98965517241379 96 52 98.3 4 290 6 85 177 HIM32904.1 hypothetical protein [Candidatus Poseidoniales archaeon] diamond 867 78.6 1 Archaea   Methanobacteriati Thermoplasmatota Candidatus Poseidoniia Candidatus Poseidoniales     Candidatus Poseidoniales archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;