RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA950981", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA950981 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
933864 933864 PRJNA950981_P_NODE_17901_length_250_cov_0.881356_g17725_i0 PRJNA950981 17901 250 0.881356 2.20339 Gemmatimonas sp. 1962908 Bacteria Bacteria 120 7.689999999999999e-30   NR WP_353266020.1 1962908 g17725 i0 68.3 1.968 82 25 98.4 1 5 250 396 476 WP_353266020.1 alpha-D-glucose phosphate-specific phosphoglucomutase [Gemmatimonas sp.] diamond 492 120 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp.
29646175 29646175 PRJNA950981_P_NODE_9970_length_322_cov_0.995984_g9794_i0 PRJNA950981 9970 322 0.995984 3.2070684800000002 Longimicrobium sp. 2029185 Bacteria Bacteria 48.5 4.01e-4   NR WP_331071924.1 2029185 g9794 i0 41.9 1.47204968944099 62 30 57.8 1 2 187 120 175 WP_331071924.1 YsnF/AvaK domain-containing protein [Longimicrobium sp.] diamond 474 48.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
30183519 30183519 PRJNA950981_P_NODE_15692_length_260_cov_0.834225_g15516_i0 PRJNA950981 15692 260 0.834225 2.168985 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 44.3 0.012   NR HUF27317.1 2026741 g15516 i0 46.5 0.819230769230769 71 33 76.2 2 253 56 64 134 HUF27317.1 type II CAAX endopeptidase family protein [Gemmatimonadaceae bacterium] diamond 213 44.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;