RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA949785" and tax_phylum = "Chloroflexota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA949785 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27246770 27246770 PRJNA949785_P_NODE_17403_length_245_cov_1.790698_g17206_i0 PRJNA949785 17403 245 1.790698 4.3872101 Anaerolineales bacterium 2073117 Bacteria Bacteria 64.3 1.04e-10   NR MCJ7716686.1 2073117 g17206 i0 42.9 1.54285714285714 63 36 77.1 0 189 1 6 68 MCJ7716686.1 acyl-CoA dehydrogenase family protein [Anaerolineales bacterium] diamond 378 64.3 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
29173122 29173122 PRJNA949785_P_NODE_17909_length_244_cov_0.900585_g17712_i0 PRJNA949785 17909 244 0.900585 2.1974274 Anaerolineae bacterium 2052143 Bacteria Bacteria 53.9 5.34e-7   NR HTP09164.1 2052143 g17712 i0 46.3 4.43852459016393 54 29 66.4 0 209 48 59 112 HTP09164.1 TraR/DksA C4-type zinc finger protein [Anaerolineae bacterium] diamond 1083 53.9 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;