RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA949785" and tax_phylum = "Acidobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA949785 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7311199 7311199 PRJNA949785_P_NODE_19046_length_241_cov_0.916667_g18849_i0 PRJNA949785 19046 241 0.916667 2.20916747 Terriglobus tenax 1111115 Bacteria Bacteria 82 1.58e-16   NR WP_263410782.1 1111115 g18849 i0 56.3 0.995850622406639 80 17 99.6 1 240 1 28 89 WP_263410782.1 FAD binding domain-containing protein [Terriglobus tenax] diamond 240 82 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Terriglobus Terriglobus tenax
14961013 14961013 PRJNA949785_P_NODE_17152_length_246_cov_0.890173_g16955_i0 PRJNA949785 17152 246 0.890173 2.18982558 uncultured Acidobacteriaceae bacterium 194844 Bacteria Bacteria 171 5.879999999999999e-38   NTclustered gi|2874253956|emb|OY970281.1| 194844 g16955 i0 81.221 1.81707317073171 213 38 86 2 20 231 2412817 2413028 MAG: uncultured Acidobacteriaceae bacterium isolate MFD00008.bin.c.2 genome assembly, chromosome: 1 blastn 447 171 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   uncultured Acidobacteriaceae bacterium
27183419 27183419 PRJNA949785_P_NODE_19122_length_241_cov_0.916667_g18925_i0 PRJNA949785 19122 241 0.916667 2.20916747 Acidobacteria bacterium RBG_13_68_16 1797171 Bacteria Bacteria 51.6 2.51e-5   NR OFV81988.1 1797171 g18925 i0 59 0.485477178423237 39 16 48.5 0 122 6 1 39 OFV81988.1 MAG: hypothetical protein A2Y78_00190 [Acidobacteria bacterium RBG_13_68_16] diamond 117 51.6 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteria bacterium RBG_13_68_16
32649045 32649045 PRJNA949785_P_NODE_17360_length_246_cov_0.861272_g17163_i0 PRJNA949785 17360 246 0.861272 2.11872912 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 115 2.23e-29   NR MCY7375165.1 2283092 g17163 i0 76 0.914634146341463 75 18 91.5 0 225 1 192 266 MCY7375165.1 hypothetical protein [Pyrinomonadaceae bacterium] diamond 225 115 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;