RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA949785", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA949785 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7311171 7311171 PRJNA949785_P_NODE_16346_length_249_cov_0.863636_g16149_i0 PRJNA949785 16346 249 0.863636 2.15045364 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 156 3.6e-45   NR MBY0452714.1 2026715 g16149 i0 92.7 1.97590361445783 82 6 98.8 0 3 248 64 145 MBY0452714.1 pyruvate, phosphate dikinase [Pseudobdellovibrionaceae bacterium] diamond 492 156 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
28383563 28383563 PRJNA949785_P_NODE_15946_length_250_cov_0.870056_g15749_i0 PRJNA949785 15946 250 0.870056 2.17514 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 141 1.0899999999999998e-41   NR MBY0453021.1 2026715 g15749 i0 86.6 0.984 82 11 98.4 0 250 5 7 88 MBY0453021.1 methylcrotonoyl-CoA carboxylase [Pseudobdellovibrionaceae bacterium] diamond 246 141 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
30056991 30056991 PRJNA949785_P_NODE_16391_length_248_cov_1.748571_g16194_i0 PRJNA949785 16391 248 1.748571 4.33645608 Bdellovibrio sp. 28-41-41 1970323 Bacteria Bacteria 115 2.3e-29   NR OYZ23528.1 1970323 g16194 i0 70.4 0.979838709677419 81 24 98 0 1 243 131 211 OYZ23528.1 MAG: hypothetical protein B7Y39_04270 [Bdellovibrio sp. 28-41-41] diamond 243 115 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. 28-41-41
31068366 31068366 PRJNA949785_P_NODE_15975_length_250_cov_0.870056_g15778_i0 PRJNA949785 15975 250 0.870056 2.17514 Oligoflexia bacterium 2599941 Bacteria Bacteria 125 2.43e-31   NR MCM2279563.1 2599941 g15778 i0 75 0.912 76 19 91.2 0 235 8 1 76 MCM2279563.1 DNA polymerase III subunit alpha [Oligoflexia bacterium] diamond 228 125 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;