RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA949785", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA949785 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22610196 22610196 PRJNA949785_P_NODE_19018_length_241_cov_0.916667_g18821_i0 PRJNA949785 19018 241 0.916667 2.20916747 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 342 1.1499999999999999e-89   NTclustered gi|2874253690|emb|OY969416.1| 412056 g18821 i0 92.531 31.8174273858921 241 14 100 3 1 241 1315762 1315526 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 7668 342 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
28604634 28604634 PRJNA949785_P_NODE_17587_length_245_cov_0.895349_g17390_i0 PRJNA949785 17587 245 0.895349 2.19360505 Opitutales bacterium 2026772 Bacteria Bacteria 44.3 0.011   NR MFP4069785.1 2026772 g17390 i0 28.4 0.906122448979592 74 46 90.6 1 24 245 464 530 MFP4069785.1 alpha/beta fold hydrolase [Opitutales bacterium] diamond 222 44.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales     Opitutales bacterium
30246931 30246931 PRJNA949785_P_NODE_8212_length_370_cov_1.555556_g8015_i0 PRJNA949785 8212 370 1.555556 5.7555572 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 44.3 0.0452   NR HXI72534.1 2499141 g8015 i0 26.4 0.981081081081081 121 79 90.8 2 348 13 847 966 HXI72534.1 AAA domain-containing protein [Verrucomicrobiia bacterium] diamond 363 44.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;