RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA946307" and tax_phylum = "Nitrospinota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospinota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA946307 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27562372 27562372 PRJNA946307_P_NODE_88084_length_189_cov_3.335714_g87210_i0 PRJNA946307 88084 189 3.335714 6.30449946 Nitrospinota bacterium 2026769 Bacteria Bacteria 59.3 2.56e-8   NR MDE0331738.1 2026769 g87210 i0 75 0.571428571428571 36 9 57.1 0 110 3 1 36 MDE0331738.1 helicase-related protein [Nitrospinota bacterium] diamond 108 59.3 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium
27909649 27909649 PRJNA946307_P_NODE_49625_length_210_cov_3.484472_g48751_i0 PRJNA946307 49625 210 3.484472 7.3173912 Nitrospinota bacterium 2026769 Bacteria Bacteria 82 2.36e-16   NR MBF0635056.1 2026769 g48751 i0 54.3 1.15714285714286 81 20 91.4 2 5 196 74 154 MBF0635056.1 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) [Nitrospinota bacterium] diamond 243 82 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium
28383436 28383436 PRJNA946307_P_NODE_145446_length_166_cov_0.888889_g144572_i0 PRJNA946307 145446 166 0.888889 1.47555574 Nitrospinota bacterium 2026769 Bacteria Bacteria 89 6.18e-19   NR MCH8313770.1 2026769 g144572 i0 79.6 0.885542168674699 49 10 88.6 0 15 161 427 475 MCH8313770.1 toprim domain-containing protein [Nitrospinota bacterium] diamond 147 89 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium
30158257 30158257 PRJNA946307_P_NODE_54892_length_210_cov_2.900621_g54018_i0 PRJNA946307 54892 210 2.900621 6.0913041 Bacteria 2 Bacteria Bacteria 62 3.57e-9   NR MCH7650646.1 2026769 g54018 i0 72.7 1.75714285714286 33 9 47.1 0 208 110 151 183 MCH7650646.1 heme-binding protein [Nitrospinota bacterium] diamond 369 62 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium
30846903 30846903 PRJNA946307_P_NODE_162554_length_162_cov_0.902655_g161680_i0 PRJNA946307 162554 162 0.902655 1.4623011 Nitrospina sp. 2024844 Bacteria Bacteria 82.4 2.08e-17   NR MBT3510275.1 2024844 g161680 i0 77.1 0.888888888888889 48 11 88.9 0 19 162 171 218 MBT3510275.1 nucleotidyltransferase family protein [Nitrospina sp.] diamond 144 82.4 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae Nitrospina Nitrospina sp.
32838171 32838171 PRJNA946307_P_NODE_56800_length_210_cov_2.788820_g55926_i0 PRJNA946307 56800 210 2.78882 5.856522 Nitrospinota bacterium 2026769 Bacteria Bacteria 44.7 0.00267   NR MFP6868833.1 2026769 g55926 i0 39.2 2.01428571428571 79 32 90 3 22 210 7 85 MFP6868833.1 DUF5681 domain-containing protein [Nitrospinota bacterium] diamond 423 44.7 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;