RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA946307" and tax_phylum = "Cossaviricota"

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tax_superkingdom 1

tax_phylum 1

  • Cossaviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA946307 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8912894 8912894 PRJNA946307_P_NODE_149467_length_165_cov_0.896552_g148593_i0 PRJNA946307 149467 165 0.896552 1.4793108 Betapapillomavirus 333922 Viruses Viruses 287 3.47e-73   NTclustered gi|60294|emb|X52061.1| 10566 g148593 i0 98.193 3.96969696969697 166 0 100 2 1 165 584 421 Human papillomavirus (HPV) long control region blastn 655 287 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
11129275 11129275 PRJNA946307_P_NODE_106889_length_181_cov_1.545455_g106015_i0 PRJNA946307 106889 181 1.545455 2.79727355 Ciconia boyciana parvoviridae sp. 2794472 Viruses Viruses 82.4 1.96e-11   NTclustered gi|2045611283|gb|MW046548.1| 2794472 g106015 i0 100 0.243093922651934 44 0 24 0 137 180 2809 2766 MAG: Ciconia boyciana parvoviridae sp. isolate whs72par019 genomic sequence, sequence blastn 44 82.4 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Ciconia boyciana parvoviridae sp.
12404770 12404770 PRJNA946307_P_NODE_107950_length_180_cov_3.992366_g107076_i0 PRJNA946307 107950 180 3.992366 7.1862588 Gammapapillomavirus 16 1513261 Viruses Viruses 265 1.8e-66   NTclustered gi|389656416|ref|NC_017995.1| 1070410 g107076 i0 98.026 1.52777777777778 152 3 84 0 15 166 3382 3533 Human papillomavirus type 137, complete genome blastn 275 265 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Gammapapillomavirus Gammapapillomavirus 16

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;