RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA946307", tax_kingdom = "Metazoa" and tax_phylum = "Echinodermata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 7 ✖

tax_kingdom 1

  • Metazoa · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA946307 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4756290 4756290 PRJNA946307_P_NODE_79084_length_194_cov_6.786207_g78210_i0 PRJNA946307 79084 194 6.786207 13.16524158 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 52.8 0.017   NTclustered gi|1752358960|ref|XM_030984431.1| 7668 g78210 i0 100 0.288659793814433 28 0 14 0 146 173 1095 1068 PREDICTED: Strongylocentrotus purpuratus L-xylulose reductase-like (LOC591319), mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
8578666 8578666 PRJNA946307_P_NODE_115647_length_177_cov_1.609375_g114773_i0 PRJNA946307 115647 177 1.609375 2.84859375 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 52.8 0.015   NTclustered gi|1752398371|ref|XM_782669.5| 7668 g114773 i0 100 0.15819209039548 28 0 16 0 75 102 1540 1567 PREDICTED: Strongylocentrotus purpuratus NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial (LOC582727), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
8580626 8580626 PRJNA946307_P_NODE_68187_length_199_cov_3.733333_g67313_i0 PRJNA946307 68187 199 3.733333 7.42933267 Anneissia japonica 1529436 Echinodermata other_Eukaryota 60.2 1.03e-4   NTclustered gi|1826661462|ref|XM_033262690.1| 1529436 g67313 i0 89.583 0.241206030150754 48 4 24 1 59 105 7923 7970 PREDICTED: Anneissia japonica E3 ubiquitin-protein ligase TRIM71-like (LOC117118176), mRNA blastn 48 60.2 1 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica
25152476 25152476 PRJNA946307_P_NODE_149680_length_165_cov_0.879310_g148806_i0 PRJNA946307 149680 165 0.87931 1.4508615 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 52.8 0.014   NTclustered gi|1752405348|ref|XM_030974934.1| 7668 g148806 i0 100 0.16969696969697 28 0 17 0 64 91 390 363 PREDICTED: Strongylocentrotus purpuratus bystin (LOC578981), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
26937068 26937068 PRJNA946307_P_NODE_39662_length_213_cov_2.810976_g38788_i0 PRJNA946307 39662 213 2.810976 5.98737888 Metazoa 33208 Echinodermata other_Eukaryota 50.1 6.63e-5   NR XP_033641107.1 7604 g38788 i0 67.7 1.85915492957746 31 9 42.3 1 114 203 1100 1130 XP_033641107.1 sortilin-related receptor-like isoform X1 [Asterias rubens] diamond 396 50.1 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Forcipulatida Asteriidae Asterias Asterias rubens
27310071 27310071 PRJNA946307_P_NODE_132883_length_169_cov_3.175000_g132009_i0 PRJNA946307 132883 169 3.175 5.36575 Patiria miniata 46514 Echinodermata other_Eukaryota 83.2 6.3e-17   NR XP_038065735.1 46514 g132009 i0 66.7 7.52662721893491 54 18 95.9 0 7 168 190 243 XP_038065735.1 glycogen synthase kinase-3 beta-like isoform X2 [Patiria miniata] diamond 1272 83.2 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
27467943 27467943 PRJNA946307_P_NODE_139823_length_167_cov_1.694915_g138949_i0 PRJNA946307 139823 167 1.694915 2.83050805 Holothuria leucospilota 206669 Echinodermata other_Eukaryota 39.7 0.0341   NR KAJ8021769.1 206669 g138949 i0 40.6 0.574850299401198 32 19 57.5 0 13 108 15 46 KAJ8021769.1 hypothetical protein HOLleu_39061 [Holothuria leucospilota] diamond 96 39.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;