RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA946307", tax_kingdom = "Fungi" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA946307 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6030360 6030360 PRJNA946307_P_NODE_35945_length_220_cov_3.192982_g35071_i0 PRJNA946307 35945 220 3.192982 7.0245604 Blastocladiales sp. 2692728 Fungi Fungi 137 5.23e-28   NTclustered gi|2468790988|gb|OQ702914.1| 2692728 g35071 i0 79.048 4.61818181818182 210 37 94 5 15 220 4328 4534 Blastocladiales sp. isolate PSC224 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 1016 137 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales     Blastocladiales sp.
8912514 8912514 PRJNA946307_P_NODE_100347_length_184_cov_1.466667_g99473_i0 PRJNA946307 100347 184 1.466667 2.69866728 Blastocladiales 4805 Fungi Fungi 110 9.18e-20   NTclustered gi|1405239019|ref|NG_027623.1| 64504 g99473 i0 95.588 36.945652173913 68 3 37 0 103 170 2536 2469 Allomyces arbusculus UCBMG Brasil 2 28S rRNA gene, partial sequence; from reference material blastn 6798 110 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces arbusculus
10188601 10188601 PRJNA946307_P_NODE_122208_length_174_cov_2.008000_g121334_i0 PRJNA946307 122208 174 2.008 3.49392 Catenariaceae 109872 Fungi Fungi 174 2.99e-39   NTclustered gi|1866582512|gb|MT730687.1| 109876 g121334 i0 87.838 94.1034482758621 148 18 85 0 12 159 4198 4051 Catenaria anguillulae isolate JEL0194 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 16374 174 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Catenariaceae Catenaria Catenaria anguillulae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;