RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA946307" and tax_clade = "acIV cluster"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • acIV cluster · 5 ✖

bioproject 1

  • PRJNA946307 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28611230 28611230 PRJNA946307_P_NODE_153507_length_164_cov_0.904348_g152633_i0 PRJNA946307 153507 164 0.904348 1.48313072 Acidimicrobium 53634 Bacteria Bacteria 97.4 4.85e-22   NR KRO48912.1 1655583 g152633 i0 98 20.3780487804878 50 1 91.5 0 14 163 248 297 KRO48912.1 MAG: methylmalonyl-CoA mutase, partial [Acidimicrobiia bacterium BACL6 MAG-120924-bin43] diamond 3342 97.4 1 Bacteria acIV cluster Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium BACL6 MAG-120924-bin43
28983587 28983587 PRJNA946307_P_NODE_113448_length_178_cov_1.534884_g112574_i0 PRJNA946307 113448 178 1.534884 2.73209352 Acidimicrobiia bacterium BACL6 MAG-12 2080302 Bacteria Bacteria 72.4 4.4e-13   NR KRO47648.1 1655583 g112574 i0 88.9 0.606741573033708 36 4 60.7 0 5 112 200 235 KRO47648.1 MAG: glucose-1-phosphate thymidylyltransferase [Acidimicrobiia bacterium BACL6 MAG-120924-bin43] diamond 108 72.4 1 Bacteria acIV cluster Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium BACL6 MAG-120924-bin43
30189991 30189991 PRJNA946307_P_NODE_150472_length_165_cov_0.879310_g149598_i0 PRJNA946307 150472 165 0.87931 1.4508615 Bacteria 2 Bacteria Bacteria 99 2.19e-23   NR KRO65262.1 1655584 g149598 i0 92.2 3.70909090909091 51 4 92.7 0 2 154 65 115 KRO65262.1 MAG: hypothetical protein ABR76_03455, partial [Acidimicrobiia bacterium BACL6 MAG-121220-bin61] diamond 612 100 0.99 Bacteria acIV cluster Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium BACL6 MAG-121220-bin61
31454311 31454311 PRJNA946307_P_NODE_158716_length_163_cov_0.894737_g157842_i0 PRJNA946307 158716 163 0.894737 1.45842131 Bacteria 2 Bacteria Bacteria 105 4.27e-25   NR KRO45945.1 1655583 g157842 i0 95.8 1.76687116564417 48 2 88.3 0 5 148 260 307 KRO45945.1 MAG: choline dehydrogenase, partial [Acidimicrobiia bacterium BACL6 MAG-120924-bin43] diamond 288 106 0.990566037735849 Bacteria acIV cluster Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium BACL6 MAG-120924-bin43
31795167 31795167 PRJNA946307_P_NODE_145857_length_166_cov_0.871795_g144983_i0 PRJNA946307 145857 166 0.871795 1.4471797 Acidimicrobiia bacterium BACL6 MAG-12 2080302 Bacteria Bacteria 105 1.3999999999999999e-24   NR KRO46435.1 1655583 g144983 i0 98 0.903614457831325 50 1 90.4 0 165 16 499 548 KRO46435.1 MAG: elongation factor G, partial [Acidimicrobiia bacterium BACL6 MAG-120924-bin43] diamond 150 105 1 Bacteria acIV cluster Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium BACL6 MAG-120924-bin43

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;