RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA946307", tax_clade = "RNA satellites" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 1 ✖

tax_clade 1

  • RNA satellites · 1 ✖

bioproject 1

  • PRJNA946307 · 1 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14955941 14955941 PRJNA946307_P_NODE_86092_length_190_cov_2.617021_g85218_i0 PRJNA946307 86092 190 2.617021 4.9723399 Sclerotinia sclerotiorum hypovirus 7 satellite-like RNA 2822894 Viruses Viruses 89.8 1.24e-13   NTclustered gi|2111886850|gb|MW454886.1| 2822894 g85218 i0 85.714 0.442105263157895 84 12 44 0 84 167 118 201 Sclerotinia sclerotiorum hypovirus 7 satellite-like RNA isolate GB375-3 hypothetical protein gene, complete cds blastn 84 89.8 1 Viruses RNA satellites             Sclerotinia sclerotiorum hypovirus 7 satellite-like RNA

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;