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contig_metadata

28 rows where bioproject = "PRJNA946307" and tax_clade = "Methanomada group"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 28 ✖

bioproject 1

  • PRJNA946307 · 28 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1259948 1259948 PRJNA946307_P_NODE_12841_length_366_cov_3.252366_g11975_i0 PRJNA946307 12841 366 3.252366 11.90365956 root 1 Root_unresolved Root_unresolved 553 7.81e-153   NTclustered gi|1651227316|emb|LR590664.1| 2173 g11975 i0 94.602 101.953551912568 352 10 96 2 15 366 889 1231 Methanobrevibacter smithii partial 16S rRNA gene, strain C2 CSUR P5816 blastn 37315 553 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
1260163 1260163 PRJNA946307_P_NODE_155721_length_163_cov_2.508772_g154847_i0 PRJNA946307 155721 163 2.508772 4.08929836 Methanobrevibacter 2172 Archaea Archaea 265 1.6e-66   NTclustered gi|2791693311|gb|CP144200.1| 2173 g154847 i0 98.658 8.20858895705521 149 2 91 0 15 163 1616217 1616365 Methanobrevibacter smithii strain GRAZ-2 chromosome, complete genome blastn 1338 265 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
2535899 2535899 PRJNA946307_P_NODE_161102_length_162_cov_1.690265_g160228_i0 PRJNA946307 161102 162 1.690265 2.7382293 root 1 Root_unresolved Root_unresolved 292 7.3e-75   NTclustered gi|2791693311|gb|CP144200.1| 2173 g160228 i0 100 99.5185185185185 158 0 98 0 4 161 1283319 1283162 Methanobrevibacter smithii strain GRAZ-2 chromosome, complete genome blastn 16122 292 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
2536078 2536078 PRJNA946307_P_NODE_23422_length_265_cov_3.365741_g22548_i0 PRJNA946307 23422 265 3.365741 8.91921365 Methanobrevibacter 2172 Archaea Archaea 363 9.849999999999999e-96   NTclustered gi|1294447101|gb|CP017803.1| 2173 g22548 i0 90.672 90.6943396226415 268 12 96 3 11 265 265066 265333 Methanobrevibacter smithii strain KB11 chromosome, complete genome blastn 24034 363 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
5089016 5089016 PRJNA946307_P_NODE_55864_length_210_cov_2.875776_g54990_i0 PRJNA946307 55864 210 2.875776 6.0391296 root 1 Root_unresolved Root_unresolved 315 2.13e-81   NTclustered gi|1721134173|emb|LR698975.1| 2317 g54990 i0 93.878 97.1095238095238 196 12 93 0 15 210 409648 409843 Methanosphaera stadtmanae isolate MGYG-HGUT-02164 genome assembly, chromosome: 1 blastn 20393 315 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera stadtmanae
8912791 8912791 PRJNA946307_P_NODE_137907_length_168_cov_0.873950_g137033_i0 PRJNA946307 137907 168 0.87395 1.468236 Methanobrevibacter 2172 Archaea Archaea 285 1.28e-72   NTclustered gi|2791693311|gb|CP144200.1| 2173 g137033 i0 99.363 100.196428571429 157 1 93 0 12 168 1286445 1286601 Methanobrevibacter smithii strain GRAZ-2 chromosome, complete genome blastn 16833 285 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
11130682 11130682 PRJNA946307_P_NODE_29649_length_238_cov_4.555556_g28775_i0 PRJNA946307 29649 238 4.555556 10.84222328 Methanobrevibacter smithii 2173 Archaea Archaea 414 2.37e-111   NTclustered gi|1294447101|gb|CP017803.1| 2173 g28775 i0 100 26.4117647058824 224 0 94 0 15 238 265509 265732 Methanobrevibacter smithii strain KB11 chromosome, complete genome blastn 6286 414 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
15287775 15287775 PRJNA946307_P_NODE_117152_length_176_cov_2.787402_g116278_i0 PRJNA946307 117152 176 2.787402 4.90582752 Methanobacterium 2160 Archaea Archaea 268 1.3499999999999999e-67   NTclustered gi|584298059|gb|KF881998.1| 2161 g116278 i0 96.875 105.471590909091 160 5 91 0 3 162 910 751 Methanobacterium bryantii strain M.o.H. 23S ribosomal RNA gene, partial sequence blastn 18563 268 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium bryantii
19111160 19111160 PRJNA946307_P_NODE_11155_length_399_cov_4.357143_g10295_i0 PRJNA946307 11155 399 4.357143 17.38500057 Methanobrevibacter 2172 Archaea Archaea 555 2.3899999999999995e-153   NTclustered gi|1294447101|gb|CP017803.1| 2173 g10295 i0 93.734 79.1779448621554 383 2 96 3 15 397 262046 262406 Methanobrevibacter smithii strain KB11 chromosome, complete genome blastn 31592 555 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
20387215 20387215 PRJNA946307_P_NODE_80296_length_193_cov_5.576389_g79422_i0 PRJNA946307 80296 193 5.576389 10.76243077 Methanobrevibacter 2172 Archaea Archaea 327 2.47e-85   NTclustered gi|2791693311|gb|CP144200.1| 2173 g79422 i0 99.444 88.0310880829015 180 1 93 0 4 183 1286838 1286659 Methanobrevibacter smithii strain GRAZ-2 chromosome, complete genome blastn 16990 327 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
21662824 21662824 PRJNA946307_P_NODE_33697_length_226_cov_2.305085_g32823_i0 PRJNA946307 33697 226 2.305085 5.2094921 root 1 Root_unresolved Root_unresolved 388 1.3499999999999998e-103   NTclustered gi|2791693311|gb|CP144200.1| 2173 g32823 i0 98.636 163.615044247788 220 1 96 2 5 222 1286945 1287164 Methanobrevibacter smithii strain GRAZ-2 chromosome, complete genome blastn 36977 388 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
22937762 22937762 PRJNA946307_P_NODE_138538_length_167_cov_6.872881_g137664_i0 PRJNA946307 138538 167 6.872881 11.47771127 root 1 Root_unresolved Root_unresolved 276 7.64e-70   NTclustered gi|2791693311|gb|CP144200.1| 2173 g137664 i0 99.342 83.8263473053892 152 1 91 0 2 153 1287329 1287178 Methanobrevibacter smithii strain GRAZ-2 chromosome, complete genome blastn 13999 276 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
23878671 23878671 PRJNA946307_P_NODE_132439_length_170_cov_1.074380_g131565_i0 PRJNA946307 132439 170 1.07438 1.826446 Methanobrevibacter smithii 2173 Archaea Archaea 289 9.949999999999999e-74   NTclustered gi|1294447101|gb|CP017803.1| 2173 g131565 i0 100 18.9235294117647 156 0 92 0 1 156 264331 264176 Methanobrevibacter smithii strain KB11 chromosome, complete genome blastn 3217 289 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
24211545 24211545 PRJNA946307_P_NODE_127339_length_172_cov_1.569106_g126465_i0 PRJNA946307 127339 172 1.569106 2.69886232 Methanobacterium 2160 Archaea Archaea 215 1.74e-51   NTclustered gi|584298061|gb|KF882000.1| 483896 g126465 i0 91.195 104.912790697674 159 13 92 1 14 172 514 671 Methanobacterium kanagiense strain 169 23S ribosomal RNA gene, partial sequence blastn 18045 217 0.990783410138249 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium kanagiense
25154030 25154030 PRJNA946307_P_NODE_78040_length_195_cov_4.678082_g77166_i0 PRJNA946307 78040 195 4.678082 9.1222599 Methanobacterium petrolearium 710190 Archaea Archaea 135 1.6300000000000002e-27   NTclustered gi|2465759960|dbj|AP027739.1| 710190 g77166 i0 91.753 0.497435897435897 97 8 50 0 1 97 1582009 1582105 Methanobacterium petrolearium NBRC 105198 DNA, complete genome blastn 97 135 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium petrolearium
25487135 25487135 PRJNA946307_P_NODE_36740_length_218_cov_3.295858_g35866_i0 PRJNA946307 36740 218 3.295858 7.18497044 Methanobrevibacter 2172 Archaea Archaea 372 1.3e-98   NTclustered gi|2791693311|gb|CP144200.1| 2173 g35866 i0 99.034 143.344036697248 207 2 95 0 1 207 1285962 1285756 Methanobrevibacter smithii strain GRAZ-2 chromosome, complete genome blastn 31249 372 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
26645293 26645293 PRJNA946307_P_NODE_104321_length_182_cov_2.142857_g103447_i0 PRJNA946307 104321 182 2.142857 3.89999974 Methanobacterium paludis 868131 Archaea Archaea 85.5 2.17e-19   NR WP_013825963.1 868131 g103447 i0 73.2 2.76923076923077 56 15 92.3 0 169 2 78 133 WP_013825963.1 uL15m family ribosomal protein [Methanobacterium paludis] diamond 504 85.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium paludis
27057151 27057151 PRJNA946307_P_NODE_71162_length_199_cov_2.973333_g70288_i0 PRJNA946307 71162 199 2.973333 5.91693267 Methanobacteriaceae archaeon 2099680 Archaea Archaea 64.3 4.92e-10   NR NYB51693.1 2099680 g70288 i0 93.9 0.49748743718593 33 2 49.7 0 100 2 48 80 NYB51693.1 NAD(P)/FAD-dependent oxidoreductase [Methanobacteriaceae archaeon] diamond 99 64.3 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   Methanobacteriaceae archaeon
28478194 28478194 PRJNA946307_P_NODE_107846_length_180_cov_4.885496_g106972_i0 PRJNA946307 107846 180 4.885496 8.7938928 Methanobacterium sp. 2164 Archaea Archaea 94 4.149999999999999e-23   NR MDD1775128.1 2164 g106972 i0 87.5 3.2 48 6 80 0 144 1 1 48 MDD1775128.1 dinitrogenase iron-molybdenum cofactor biosynthesis protein [Methanobacterium sp.] diamond 576 94 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
29046622 29046622 PRJNA946307_P_NODE_137628_length_168_cov_1.453782_g136754_i0 PRJNA946307 137628 168 1.453782 2.44235376 Methanobrevibacter sp. 66852 Archaea Archaea 56.6 1.73e-7   NR MDO5819915.1 66852 g136754 i0 60.9 1.64285714285714 46 14 75 1 165 40 195 240 MDO5819915.1 RNA ligase family protein [Methanobrevibacter sp.] diamond 276 56.6 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
29204653 29204653 PRJNA946307_P_NODE_81729_length_192_cov_6.356643_g80855_i0 PRJNA946307 81729 192 6.356643 12.20475456 Methanobacterium sp. 2164 Archaea Archaea 84 1.08e-19   NR MEN6592262.1 2164 g80855 i0 87 0.71875 46 6 71.9 0 20 157 1 46 MEN6592262.1 hypothetical protein [Methanobacterium sp.] diamond 138 84 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
29236061 29236061 PRJNA946307_P_NODE_153669_length_164_cov_0.904348_g152795_i0 PRJNA946307 153669 164 0.904348 1.48313072 Methanobacterium sp. PtaU1.Bin 2164 Archaea Archaea 102 1.66e-24   NR OPY20746.1 1811675 g152795 i0 96.2 0.951219512195122 52 2 95.1 0 7 162 217 268 OPY20746.1 MAG: ferrous iron efflux protein F [Methanobacterium sp. PtaU1.Bin097] diamond 156 102 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. PtaU1.Bin097
29962312 29962312 PRJNA946307_P_NODE_75511_length_197_cov_3.162162_g74637_i0 PRJNA946307 75511 197 3.162162 6.22945914 Methanobacteriaceae archaeon 2099680 Archaea Archaea 85.1 1.97e-18   NR NYB25845.1 2099680 g74637 i0 69.8 0.959390862944162 63 18 95.9 1 7 195 107 168 NYB25845.1 phosphoribosylanthranilate isomerase [Methanobacteriaceae archaeon] diamond 189 85.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   Methanobacteriaceae archaeon
30373372 30373372 PRJNA946307_P_NODE_154432_length_164_cov_0.886957_g153558_i0 PRJNA946307 154432 164 0.886957 1.45460948 Methanobacterium sp. 2164 Archaea Archaea 85.1 8.87e-18   NR MDD1775540.1 2164 g153558 i0 79.6 0.896341463414634 49 10 89.6 0 148 2 316 364 MDD1775540.1 pyridoxal phosphate-dependent aminotransferase [Methanobacterium sp.] diamond 147 85.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
30380032 30380032 PRJNA946307_P_NODE_148212_length_165_cov_1.672414_g147338_i0 PRJNA946307 148212 165 1.672414 2.7594831 Methanobacterium 2160 Archaea Archaea 95.9 9.78e-22   NR MCE5214113.1 2164 g147338 i0 94.1 2.78181818181818 51 3 92.7 0 13 165 229 279 MCE5214113.1 AAA family ATPase [Methanobacterium sp.] diamond 459 95.9 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
31036745 31036745 PRJNA946307_P_NODE_128915_length_171_cov_2.147541_g128041_i0 PRJNA946307 128915 171 2.147541 3.67229511 Methanobacterium sp. PtaU1.Bin 2164 Archaea Archaea 70.5 1.25e-12   NR OPY19818.1 1811675 g128041 i0 86.8 1.33333333333333 38 5 66.7 0 157 44 233 270 OPY19818.1 MAG: 2-oxoglutarate synthase subunit KorB [Methanobacterium sp. PtaU1.Bin097] diamond 228 70.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. PtaU1.Bin097
31320895 31320895 PRJNA946307_P_NODE_170455_length_155_cov_4.113208_g169581_i0 PRJNA946307 170455 155 4.113208 6.3754724 Methanobacteriaceae archaeon 2099680 Archaea Archaea 97.8 3.0099999999999995e-23   NR NYB27019.1 2099680 g169581 i0 89.1 0.890322580645161 46 5 89 0 140 3 18 63 NYB27019.1 exodeoxyribonuclease III [Methanobacteriaceae archaeon] diamond 138 97.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   Methanobacteriaceae archaeon
32838100 32838100 PRJNA946307_P_NODE_139120_length_167_cov_2.508475_g138246_i0 PRJNA946307 139120 167 2.508475 4.18915325 Methanosphaera sp. 2666342 Archaea Archaea 92.8 2.98e-20   NR WP_292537504.1 2666342 g138246 i0 97.8 0.808383233532934 45 1 80.8 0 18 152 311 355 WP_292537504.1 formylmethanofuran dehydrogenase subunit A [Methanosphaera sp.] diamond 135 92.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;