RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

10 rows where bioproject = "PRJNA946307", tax_clade = "FCB group" and tax_phylum = "Ignavibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 10 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 10 ✖

bioproject 1

  • PRJNA946307 · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
925724 925724 PRJNA946307_P_NODE_114241_length_178_cov_1.201550_g113367_i0 PRJNA946307 114241 178 1.20155 2.138759 Ignavibacteriales bacterium 2049428 Bacteria Bacteria 104 2.34e-24   NR HOP49471.1 2049428 g113367 i0 92.7 0.926966292134832 55 4 92.7 0 168 4 897 951 HOP49471.1 response regulator [Ignavibacteriales bacterium] diamond 165 104 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales     Ignavibacteriales bacterium
12405013 12405013 PRJNA946307_P_NODE_121790_length_174_cov_2.352000_g120916_i0 PRJNA946307 121790 174 2.352 4.09248 Ignavibacteriales bacterium 2049428 Bacteria Bacteria 124 3.0599999999999998e-24   NTclustered gi|1958088527|gb|CP065001.1| 2049428 g120916 i0 81.41 28.5459770114943 156 25 90 4 1 156 609442 609291 Ignavibacteriales bacterium isolate Kalu_18-Q3-R12-55_MAXAC.127v2 chromosome, complete genome blastn 4967 124 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales     Ignavibacteriales bacterium
12405306 12405306 PRJNA946307_P_NODE_138070_length_168_cov_0.873950_g137196_i0 PRJNA946307 138070 168 0.87395 1.468236 Ignavibacteriales bacterium 2049428 Bacteria Bacteria 104 2.1e-26   NR HRT99185.1 2049428 g137196 i0 96 2.67857142857143 50 2 89.3 0 153 4 78 127 HRT99185.1 pyruvate, phosphate dikinase [Ignavibacteriales bacterium] diamond 450 104 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales     Ignavibacteriales bacterium
20052569 20052569 PRJNA946307_P_NODE_126276_length_172_cov_2.382114_g125402_i0 PRJNA946307 126276 172 2.382114 4.09723608 Ignavibacterium sp. 2651167 Bacteria Bacteria 54.7 0.004   NTclustered gi|2314740639|dbj|AP026678.1| 2651167 g125402 i0 100 0.168604651162791 29 0 17 0 53 81 1402622 1402650 MAG: Ignavibacterium sp. KatS3mg037 DNA, complete genome blastn 29 54.7 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae Ignavibacterium Ignavibacterium sp.
23878468 23878468 PRJNA946307_P_NODE_120039_length_175_cov_1.769841_g119165_i0 PRJNA946307 120039 175 1.769841 3.09722175 Ignavibacteriaceae bacterium 2651163 Bacteria Bacteria 178 2.3299999999999993e-40   NTclustered gi|2621704225|emb|OY761615.1| 2651163 g119165 i0 89.362 4.43428571428571 141 15 81 0 1 141 3101165 3101025 MAG: Ignavibacteriaceae bacterium isolate 0c874fb2-9291-49ee-bde1-826c4484edf3 genome assembly, chromosome: 1 blastn 776 178 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae   Ignavibacteriaceae bacterium
26613666 26613666 PRJNA946307_P_NODE_130801_length_170_cov_2.462810_g129927_i0 PRJNA946307 130801 170 2.46281 4.186777 Ignavibacteriales bacterium 2049428 Bacteria Bacteria 94.4 9.15e-21   NR HOP48990.1 2049428 g129927 i0 89.4 0.829411764705882 47 5 82.9 0 161 21 170 216 HOP48990.1 alpha-amylase family glycosyl hydrolase [Ignavibacteriales bacterium] diamond 141 94.4 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales     Ignavibacteriales bacterium
26676882 26676882 PRJNA946307_P_NODE_135681_length_168_cov_4.411765_g134807_i0 PRJNA946307 135681 168 4.411765 7.4117652 Ignavibacteriota bacterium 2026749 Bacteria Bacteria 67.8 1.57e-11   NR MCB0727705.1 2026749 g134807 i0 56 1.76785714285714 50 22 89.3 0 14 163 220 269 MCB0727705.1 PliI family lysozyme inhibitor of I-type lysozyme [Ignavibacteriota bacterium] diamond 297 67.8 1 Bacteria FCB group Pseudomonadati Ignavibacteriota         Ignavibacteriota bacterium
26708614 26708614 PRJNA946307_P_NODE_81081_length_193_cov_3.090278_g80207_i0 PRJNA946307 81081 193 3.090278 5.96423654 Ignavibacteriales bacterium 2049428 Bacteria Bacteria 79 1.48e-15   NR MCK7517096.1 2049428 g80207 i0 56.7 1.04145077720207 67 19 88.6 1 4 174 146 212 MCK7517096.1 alcohol dehydrogenase catalytic domain-containing protein [Ignavibacteriales bacterium] diamond 201 79 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales     Ignavibacteriales bacterium
28200512 28200512 PRJNA946307_P_NODE_44046_length_211_cov_2.783951_g43172_i0 PRJNA946307 44046 211 2.783951 5.87413661 Pseudomonadati 3379134 Bacteria Bacteria 65.5 2.43e-10   NR MFA5012717.1 2053306 g43172 i0 90.6 3.1563981042654 32 3 45.5 0 5 100 1807 1838 MFA5012717.1 alpha-2-macroglobulin family protein [Ignavibacteria bacterium] diamond 666 65.5 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
32743949 32743949 PRJNA946307_P_NODE_86160_length_190_cov_2.460993_g85286_i0 PRJNA946307 86160 190 2.460993 4.6758867 Ignavibacteria bacterium 2053306 Bacteria Bacteria 58.9 3.63e-8   NR MCU7495390.1 2053306 g85286 i0 53.4 1.81578947368421 58 27 91.6 0 7 180 340 397 MCU7495390.1 PAS domain S-box protein [Ignavibacteria bacterium] diamond 345 58.9 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;