RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA946307", tax_clade = "Candidatus Thermofonsia Clade 3" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Candidatus Thermofonsia Clade 3 · 3 ✖

bioproject 1

  • PRJNA946307 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4755592 4755592 PRJNA946307_P_NODE_384_length_1816_cov_8.314092_g284_i0 PRJNA946307 384 1816 8.314092 150.98391072 Candidatus Roseilinea sp. 2838777 Bacteria Bacteria 1530 0   NTclustered gi|2314722916|dbj|AP024676.1| 2838777 g284 i0 82.09 123.436123348018 1837 286 99 33 2 1816 3494460 3496275 MAG: Candidatus Roseilinea sp. KatS3mg053 DNA, complete genome blastn 224160 1530 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia     Candidatus Roseilinea Candidatus Roseilinea sp.
8578458 8578458 PRJNA946307_P_NODE_10447_length_415_cov_5.040984_g9595_i0 PRJNA946307 10447 415 5.040984 20.9200836 Candidatus Roseilinea sp. 2838777 Bacteria Bacteria 540 6.99e-149   NTclustered gi|2314722916|dbj|AP024676.1| 2838777 g9595 i0 91.184 505.89156626506 397 35 96 0 17 413 3497484 3497880 MAG: Candidatus Roseilinea sp. KatS3mg053 DNA, complete genome blastn 209945 540 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia     Candidatus Roseilinea Candidatus Roseilinea sp.
8580781 8580781 PRJNA946307_P_NODE_77087_length_196_cov_3.204082_g76213_i0 PRJNA946307 77087 196 3.204082 6.28000072 Candidatus Roseilinea sp. 2838777 Bacteria Bacteria 147 7.56e-31   NTclustered gi|2314722916|dbj|AP024676.1| 2838777 g76213 i0 94.681 1.47448979591837 94 5 48 0 98 191 3495669 3495762 MAG: Candidatus Roseilinea sp. KatS3mg053 DNA, complete genome blastn 289 147 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia     Candidatus Roseilinea Candidatus Roseilinea sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;