RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA946307", tax_clade = "Apusozoa" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 2 ✖

tax_clade 1

  • Apusozoa · 2 ✖

bioproject 1

  • PRJNA946307 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6030526 6030526 PRJNA946307_P_NODE_44705_length_210_cov_6.515528_g43831_i0 PRJNA946307 44705 210 6.515528 13.6826088 Thecamonas trahens 529818 Root_unresolved Root_unresolved 76.8 1.09e-9   NTclustered gi|923127176|ref|XM_013901601.1| 461836 g43831 i0 88.71 0.557142857142857 62 7 30 0 39 100 437 376 Thecamonas trahens ATCC 50062 ATP-dependent RNA helicase HAS1 (AMSG_06372), partial mRNA blastn 117 76.8 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
21328067 21328067 PRJNA946307_P_NODE_125497_length_173_cov_1.258065_g124623_i0 PRJNA946307 125497 173 1.258065 2.17645245 Catacumbia lutetiensis 2925415 Root_unresolved Root_unresolved 158 2.9899999999999998e-34   NTclustered gi|2206682166|gb|OM966639.1| 2925415 g124623 i0 89.516 67.9075144508671 124 13 72 0 41 164 5178 5301 Catacumbia lutetiensis strain ORSAYFEB19APU2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 11748 158 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Catacumbia Catacumbia lutetiensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;