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contig_metadata

17 rows where bioproject = "PRJNA946307", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 17 ✖

tax_clade 1

  • Amoebozoa · 17 ✖

bioproject 1

  • PRJNA946307 · 17 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
927143 927143 PRJNA946307_P_NODE_36001_length_220_cov_2.643275_g35127_i0 PRJNA946307 36001 220 2.643275 5.815205 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 375 1.0199999999999998e-99   NTclustered gi|399764167|gb|JQ271678.1| 1215977 g35127 i0 99.515 90.6363636363636 206 1 94 0 15 220 792 997 Copromyxa sp. PKD 2011 strain ZEB1 18S ribosomal RNA gene, partial sequence blastn 19940 375 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
2201466 2201466 PRJNA946307_P_NODE_139042_length_167_cov_2.855932_g138168_i0 PRJNA946307 139042 167 2.855932 4.76940644 Paraflabellula hoguae 136459 Tubulinea other_Eukaryota 195 2.2e-45   NTclustered gi|145386791|gb|EF216916.1| 136459 g138168 i0 89.61 91.4071856287425 154 15 92 1 1 153 1613 1460 Paraflabellula hoguae 28S large subunit ribosomal RNA gene, partial sequence blastn 15265 195 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Paraflabellula Paraflabellula hoguae
2536416 2536416 PRJNA946307_P_NODE_56462_length_210_cov_2.826087_g55588_i0 PRJNA946307 56462 210 2.826087 5.9347827 Tubulinea 555369 Tubulinea other_Eukaryota 161 2.93e-35   NTclustered gi|165968562|gb|EU377602.1| 136450 g55588 i0 96.875 53.8047619047619 96 3 88 0 111 206 302 397 Echinamoeba exundans strain CRIB40 18S ribosomal RNA gene, partial sequence blastn 11299 161 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida   Echinamoebidae Echinamoeba Echinamoeba exundans
2536422 2536422 PRJNA946307_P_NODE_57222_length_210_cov_2.732919_g56348_i0 PRJNA946307 57222 210 2.732919 5.7391299 Saccamoeba 136463 Tubulinea other_Eukaryota 252 1.69e-62   NTclustered gi|355339463|gb|JN112797.1| 704142 g56348 i0 88.119 7.92857142857143 202 17 93 2 5 199 1869 1668 Saccamoeba lacustris strain SL-elo 18S ribosomal RNA gene, partial sequence blastn 1665 252 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba lacustris
3476647 3476647 PRJNA946307_P_NODE_123383_length_173_cov_5.951613_g122509_i0 PRJNA946307 123383 173 5.951613 10.29629049 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 265 1.7099999999999998e-66   NTclustered gi|387861347|gb|JQ678664.1| 5778 g122509 i0 98.026 81.5664739884393 152 3 88 0 15 166 396 547 Hartmannella vermiformis clone AR373H 18S ribosomal RNA gene, partial sequence blastn 14111 265 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
4754125 4754125 PRJNA946307_P_NODE_112104_length_178_cov_6.046512_g111230_i0 PRJNA946307 112104 178 6.046512 10.76279136 Centropyxis aerophila 2898874 Tubulinea other_Eukaryota 230 6.4799999999999995e-56   NTclustered gi|2156866368|gb|OL677465.1| 2898874 g111230 i0 96.429 1.41573033707865 140 3 79 1 15 154 783 920 Centropyxis aerophila voucher R61 small subunit ribosomal RNA gene, partial sequence blastn 252 230 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Centropyxidae Centropyxis Centropyxis aerophila
9853985 9853985 PRJNA946307_P_NODE_12668_length_369_cov_4.190625_g11802_i0 PRJNA946307 12668 369 4.190625 15.46340625 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 508 1.73e-139   NTclustered gi|909719645|gb|KT185625.1| 5778 g11802 i0 95.86 21.2411924119241 314 13 85 0 40 353 6790 7103 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 7838 508 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
9856133 9856133 PRJNA946307_P_NODE_9108_length_452_cov_8.178660_g8274_i0 PRJNA946307 9108 452 8.17866 36.9675432 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 496 1.68e-135   NTclustered gi|511487963|gb|JX898537.1| 1260765 g8274 i0 87.703 4.42256637168142 431 45 94 8 3 428 428 1 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 1999 496 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
11130451 11130451 PRJNA946307_P_NODE_174709_length_150_cov_5.405941_g173835_i0 PRJNA946307 174709 150 5.405941 8.1089115 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 246 5.2199999999999995e-61   NTclustered gi|300078496|gb|GU001158.1| 5778 g173835 i0 99.265 11.1466666666667 136 1 91 0 15 150 3410 3545 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1672 246 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13679409 13679409 PRJNA946307_P_NODE_110831_length_179_cov_2.184615_g109957_i0 PRJNA946307 110831 179 2.184615 3.91046085 Centropyxis aerophila 2898874 Tubulinea other_Eukaryota 298 1.76e-76   NTclustered gi|2156866368|gb|OL677465.1| 2898874 g109957 i0 98.81 32.2346368715084 168 1 93 1 12 178 364 531 Centropyxis aerophila voucher R61 small subunit ribosomal RNA gene, partial sequence blastn 5770 298 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Centropyxidae Centropyxis Centropyxis aerophila
13679476 13679476 PRJNA946307_P_NODE_115551_length_177_cov_1.914062_g114677_i0 PRJNA946307 115551 177 1.914062 3.38788974 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 224 2.99e-54   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g114677 i0 96.992 1.25988700564972 133 4 75 0 2 134 4169 4037 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 223 224 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
14014541 14014541 PRJNA946307_P_NODE_45651_length_210_cov_4.962733_g44777_i0 PRJNA946307 45651 210 4.962733 10.4217393 Tubulinea 555369 Tubulinea other_Eukaryota 279 7.77e-71   NTclustered gi|11527302|gb|AF293895.1|AF293895 136450 g44777 i0 90.291 39.7047619047619 206 10 93 1 15 210 1364 1569 Echinamoeba exundans small subunit ribosomal RNA gene, complete sequence blastn 8338 279 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida   Echinamoebidae Echinamoeba Echinamoeba exundans
18778066 18778066 PRJNA946307_P_NODE_144755_length_166_cov_1.299145_g143881_i0 PRJNA946307 144755 166 1.299145 2.1565807 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 259 7.63e-65   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g143881 i0 97.386 11.6746987951807 153 2 92 2 15 166 3532 3683 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 1938 259 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
21329846 21329846 PRJNA946307_P_NODE_7037_length_531_cov_8.653527_g6250_i0 PRJNA946307 7037 531 8.653527 45.95022837 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 409 2.68e-109   NTclustered gi|511487963|gb|JX898537.1| 1260765 g6250 i0 84.101 42.4557438794727 434 57 81 12 3 430 428 1 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 22544 409 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
21662027 21662027 PRJNA946307_P_NODE_10357_length_417_cov_3.978261_g9505_i0 PRJNA946307 10357 417 3.978261 16.58934837 Vermamoeba 1260114 Tubulinea other_Eukaryota 732 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g9505 i0 98.554 59.2637889688249 415 5 99 1 4 417 5310 4896 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 24713 732 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22937732 22937732 PRJNA946307_P_NODE_13538_length_354_cov_11.032787_g12668_i0 PRJNA946307 13538 354 11.032787 39.05606598 Vermamoeba 1260114 Tubulinea other_Eukaryota 619 7.319999999999999e-173   NTclustered gi|300078496|gb|GU001158.1| 5778 g12668 i0 98.847 39.6892655367232 347 4 98 0 1 347 2537 2883 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 14050 619 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
23879219 23879219 PRJNA946307_P_NODE_166159_length_159_cov_3.427273_g165285_i0 PRJNA946307 166159 159 3.427273 5.44936407 Polychaos centronucleolus 2762048 Tubulinea other_Eukaryota 246 5.63e-61   NTclustered gi|1887703455|gb|MT874850.1| 2762048 g165285 i0 97.241 2.93081761006289 145 4 91 0 1 145 248 104 Polychaos centronucleolus strain DKis1.1 small subunit ribosomal RNA gene, partial sequence blastn 466 246 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Polychaos Polychaos centronucleolus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;