RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA944406" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA944406 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4752441 4752441 PRJNA944406_P_NODE_10044_length_393_cov_2.353125_g9085_i0 PRJNA944406 10044 393 2.353125 9.24778125 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 473 6.769999999999999e-129   NTclustered gi|2319615589|ref|XR_007835968.1| 412133 g9085 i0 90.358 18.2875318066158 363 31 92 4 28 389 1248 889 Trichomonas vaginalis G3 23S ribosomal RNA (TVAGG3_0033920), rRNA blastn 7187 473 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
4752891 4752891 PRJNA944406_P_NODE_38144_length_274_cov_1.532338_g37185_i0 PRJNA944406 38144 274 1.532338 4.19860612 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 52.8 0.025   NTclustered gi|123478648|ref|XM_001322451.1| 412133 g37185 i0 100 0.102189781021898 28 0 10 0 221 248 279 306 Trichomonas vaginalis G3 regulation of centriole replication (TVAGG3_0958720), partial mRNA blastn 28 52.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
9853081 9853081 PRJNA944406_P_NODE_9388_length_406_cov_0.924925_g8429_i0 PRJNA944406 9388 406 0.924925 3.7551955 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 693 0   NTclustered gi|2319615589|ref|XR_007835968.1| 412133 g8429 i0 97.537 76.7315270935961 406 9 100 1 1 406 2559 2155 Trichomonas vaginalis G3 23S ribosomal RNA (TVAGG3_0033920), rRNA blastn 31153 693 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
17502954 17502954 PRJNA944406_P_NODE_58454_length_255_cov_1.692308_g57495_i0 PRJNA944406 58454 255 1.692308 4.3153854 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 54.7 0.006   NTclustered gi|2806453984|ref|XM_068491875.1| 1144522 g57495 i0 100 0.235294117647059 29 0 11 0 61 89 1563 1535 Tritrichomonas foetus uncharacterized protein (TRFO_04403), partial mRNA blastn 60 54.7 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
21326488 21326488 PRJNA944406_P_NODE_26317_length_285_cov_2.009434_g25358_i0 PRJNA944406 26317 285 2.009434 5.7268869 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 412 1.0499999999999999e-110   NTclustered gi|2319615589|ref|XR_007835968.1| 412133 g25358 i0 92.982 64.8350877192982 285 16 100 4 1 285 716 436 Trichomonas vaginalis G3 23S ribosomal RNA (TVAGG3_0033920), rRNA blastn 18478 412 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
22602154 22602154 PRJNA944406_P_NODE_9078_length_413_cov_2.035294_g8119_i0 PRJNA944406 9078 413 2.035294 8.40576422 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 713 0   NTclustered gi|2319615589|ref|XR_007835968.1| 412133 g8119 i0 97.821 35.452784503632 413 9 100 0 1 413 1473 1885 Trichomonas vaginalis G3 23S ribosomal RNA (TVAGG3_0033920), rRNA blastn 14642 713 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;