RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA944406" and tax_phylum = "Nitrospinota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospinota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA944406 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7303096 7303096 PRJNA944406_P_NODE_8986_length_415_cov_2.040936_g8027_i0 PRJNA944406 8986 415 2.040936 8.4698844 Candidatus Nitronauta litoralis 2705533 Bacteria Bacteria 139 2.98e-28   NTclustered gi|1938439011|gb|CP048685.1| 2705533 g8027 i0 76.596 94.7012048192771 282 48 66 17 136 407 3876379 3876652 MAG: Candidatus Nitronauta litoralis isolate EB chromosome, complete genome blastn 39301 139 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae Candidatus Nitronauta Candidatus Nitronauta litoralis
8577136 8577136 PRJNA944406_P_NODE_11387_length_371_cov_0.946309_g10428_i0 PRJNA944406 11387 371 0.946309 3.51080639 Candidatus Nitrohelix vancouverensis 2705534 Bacteria Bacteria 134 1.22e-26   NTclustered gi|1938442527|gb|CP048620.1| 2705534 g10428 i0 77.043 87.4420485175202 257 44 69 9 22 277 2190004 2189762 MAG: Candidatus Nitrohelix vancouverensis isolate VA-1 chromosome blastn 32441 134 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae Candidatus Nitrohelix Candidatus Nitrohelix vancouverensis
8577801 8577801 PRJNA944406_P_NODE_7487_length_459_cov_1.569948_g6531_i0 PRJNA944406 7487 459 1.569948 7.20606132 uncultured marine Nitrospinaceae bacterium 482920 Bacteria Bacteria 211 6.94e-50   NTclustered gi|118340518|gb|EF106972.1| 482920 g6531 i0 76.334 45.6296296296296 431 81 92 16 40 459 39201 38781 Uncultured marine Nitrospinaceae bacterium clone EB080L20_F04, partial sequence blastn 20944 211 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae   uncultured marine Nitrospinaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;