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contig_metadata

23 rows where bioproject = "PRJNA944406" and tax_phylum = "Methanobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 23 ✖

tax_kingdom 1

bioproject 1

  • PRJNA944406 · 23 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
924488 924488 PRJNA944406_P_NODE_39321_length_273_cov_1.530000_g38362_i0 PRJNA944406 39321 273 1.53 4.1769 Haloarcula litorea 3032579 Archaea Archaea 52.8 0.025   NTclustered gi|2463595526|gb|CP119779.1| 3032579 g38362 i0 100 0.102564102564103 28 0 10 0 188 215 847737 847710 Haloarcula litorea strain GDY20 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula litorea
1259421 1259421 PRJNA944406_P_NODE_34121_length_278_cov_1.434146_g33162_i0 PRJNA944406 34121 278 1.434146 3.98692588 Halobacterium 2239 Archaea Archaea 95.3 4.19e-15   NTclustered gi|966204314|emb|LN831302.1| 1407499 g33162 i0 93.651 6.51798561151079 63 4 23 0 190 252 896973 897035 Halobacterium hubeiense strain JI20-1 genome assembly, chromosome: I blastn 1812 95.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium hubeiense
1259546 1259546 PRJNA944406_P_NODE_76141_length_248_cov_1.577143_g75182_i0 PRJNA944406 76141 248 1.577143 3.91131464 Methanobrevibacter 2172 Archaea Archaea 416 6.9e-112   NTclustered gi|1294447101|gb|CP017803.1| 2173 g75182 i0 97.177 138.237903225806 248 4 100 1 1 248 265311 265067 Methanobrevibacter smithii strain KB11 chromosome, complete genome blastn 34283 416 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
6027612 6027612 PRJNA944406_P_NODE_32545_length_279_cov_2.165049_g31586_i0 PRJNA944406 32545 279 2.165049 6.04048671 Halobacterium hubeiense 1407499 Archaea Archaea 52.8 0.026   NTclustered gi|966204314|emb|LN831302.1| 1407499 g31586 i0 100 0.100358422939068 28 0 10 0 11 38 144533 144560 Halobacterium hubeiense strain JI20-1 genome assembly, chromosome: I blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium hubeiense
6027662 6027662 PRJNA944406_P_NODE_37465_length_275_cov_1.306931_g36506_i0 PRJNA944406 37465 275 1.306931 3.59406025 Halalkalicoccus tibetensis 175632 Archaea Archaea 60.1 2.36e-8   NR WP_340603854.1 175632 g36506 i0 93.9 0.36 33 2 36 0 2 100 60 92 WP_340603854.1 hypothetical protein [Halalkalicoccus tibetensis] diamond 99 60.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus tibetensis
12403862 12403862 PRJNA944406_P_NODE_56810_length_257_cov_1.298913_g55851_i0 PRJNA944406 56810 257 1.298913 3.33820641 Halalkalicoccus sp. 1973143 Archaea Archaea 151 5.1e-42   NR MEM4782406.1 1973143 g55851 i0 90.6 0.992217898832685 85 8 99.2 0 257 3 26 110 MEM4782406.1 GTP-binding protein [Halalkalicoccus sp.] diamond 255 151 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus sp.
18776921 18776921 PRJNA944406_P_NODE_97875_length_243_cov_1.676471_g96916_i0 PRJNA944406 97875 243 1.676471 4.0738245300000004 Methanobacterium lacus 877455 Archaea Archaea 337 5.399999999999998e-88   NTclustered gi|325329191|gb|CP002551.1| 877455 g96916 i0 94.118 5.46090534979424 221 13 91 0 1 221 580339 580559 Methanobacterium lacus strain AL-21, complete genome blastn 1327 337 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium lacus
22601351 22601351 PRJNA944406_P_NODE_19618_length_297_cov_2.607143_g18659_i0 PRJNA944406 19618 297 2.607143 7.74321471 Methanogenium organophilum 2199 Archaea Archaea 303 6.9000000000000015e-78   NTclustered gi|2388587735|gb|CP113361.1| 2199 g18659 i0 92.093 0.723905723905724 215 17 72 0 3 217 2242403 2242189 Methanogenium organophilum strain DSM 3596 chromosome, complete genome blastn 215 303 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanogenium Methanogenium organophilum
22601640 22601640 PRJNA944406_P_NODE_45478_length_267_cov_1.587629_g44519_i0 PRJNA944406 45478 267 1.587629 4.23896943 Haloferax mediterranei 2252 Archaea Archaea 52.8 0.024   NTclustered gi|640913992|gb|CP001868.2| 523841 g44519 i0 96.774 0.337078651685393 31 1 12 0 94 124 2373736 2373766 Haloferax mediterranei ATCC 33500, complete genome blastn 90 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax mediterranei
26740042 26740042 PRJNA944406_P_NODE_99001_length_243_cov_0.905882_g98042_i0 PRJNA944406 99001 243 0.905882 2.20129326 Methanobacteriota archaeon 2026739 Archaea Archaea 137 1.7399999999999999e-38   NR RPJ50273.1 2026739 g98042 i0 87.5 2.95061728395062 80 10 98.8 0 3 242 115 194 RPJ50273.1 MAG: DUF2306 domain-containing protein [Methanobacteriota archaeon] diamond 717 137 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
27316761 27316761 PRJNA944406_P_NODE_89403_length_245_cov_1.389535_g88444_i0 PRJNA944406 89403 245 1.389535 3.40436075 Archaea 2157 Archaea Archaea 102 9.11e-24   NR MDI9642944.1 2250258 g88444 i0 61.3 6.85714285714286 80 31 98 0 2 241 140 219 MDI9642944.1 bis-aminopropyl spermidine synthase family protein [Archaeoglobales archaeon] diamond 1680 102 1 Archaea   Methanobacteriati Methanobacteriota Archaeoglobi Archaeoglobales     Archaeoglobales archaeon
27625762 27625762 PRJNA944406_P_NODE_53024_length_260_cov_1.647059_g52065_i0 PRJNA944406 53024 260 1.647059 4.2823534 Candidatus Methanogaster sp. 3386292 Archaea Archaea 55.8 1.15e-6   NR KAF5417137.1 3386292 g52065 i0 57.7 1.65 52 21 60 1 157 2 7 57 KAF5417137.1 MAG: hypothetical protein C5S48_01000 [Candidatus Methanogaster sp.] diamond 429 55.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Candidatus Methanogasteraceae Candidatus Methanogaster Candidatus Methanogaster sp.
27853338 27853338 PRJNA944406_P_NODE_53244_length_260_cov_1.631016_g52285_i0 PRJNA944406 53244 260 1.631016 4.2406416 Methanobacteriati 3366610 Archaea Archaea 99.4 2.28e-22   NR MAP58251.1 2026739 g52285 i0 57 2.97692307692308 86 37 99.2 0 2 259 145 230 MAP58251.1 cobalamin biosynthesis protein CobW [Methanobacteriota archaeon] diamond 774 99.4 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
28636251 28636251 PRJNA944406_P_NODE_99987_length_243_cov_0.905882_g99028_i0 PRJNA944406 99987 243 0.905882 2.20129326 Methanogenium sp. 2196 Archaea Archaea 42.4 0.0184   NR MFA5395176.1 2196 g99028 i0 30.9 0.839506172839506 68 44 84 1 19 222 57 121 MFA5395176.1 hypothetical protein [Methanogenium sp.] diamond 204 42.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanogenium Methanogenium sp.
28762136 28762136 PRJNA944406_P_NODE_101367_length_243_cov_0.905882_g100408_i0 PRJNA944406 101367 243 0.905882 2.20129326 Methanogenium organophilum 2199 Archaea Archaea 46.6 0.00168   NR WP_268186323.1 2199 g100408 i0 29.1 0.975308641975309 79 54 97.5 1 1 237 345 421 WP_268186323.1 hypothetical protein [Methanogenium organophilum] diamond 237 46.6 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanogenium Methanogenium organophilum
28983542 28983542 PRJNA944406_P_NODE_74348_length_249_cov_0.875000_g73389_i0 PRJNA944406 74348 249 0.875 2.17875 Palaeococcus pacificus 971279 Archaea Archaea 62.8 3.34e-9   NR WP_048164987.1 971279 g73389 i0 35.8 5.81927710843374 81 52 97.6 0 247 5 323 403 WP_048164987.1 NCS2 family permease [Palaeococcus pacificus] diamond 1449 62.8 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Palaeococcus Palaeococcus pacificus
29046511 29046511 PRJNA944406_P_NODE_101688_length_242_cov_2.378698_g100729_i0 PRJNA944406 101688 242 2.378698 5.75644916 Methanobacterium sp. 2164 Archaea Archaea 124 4.589999999999999e-31   NR MBI5679795.1 2164 g100729 i0 77.5 1.98347107438017 80 18 99.2 0 1 240 249 328 MBI5679795.1 GTP-binding protein [Methanobacterium sp.] diamond 480 124 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
29109697 29109697 PRJNA944406_P_NODE_26248_length_285_cov_2.250000_g25289_i0 PRJNA944406 26248 285 2.25 6.4125 Halococcus sediminicola 1264579 Archaea Archaea 125 1.7800000000000002e-33   NR WP_049999292.1 1264579 g25289 i0 68.1 0.957894736842105 91 28 94.7 1 3 272 126 216 WP_049999292.1 helix-turn-helix domain-containing protein [Halococcus sediminicola] diamond 273 125 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus sediminicola
29804136 29804136 PRJNA944406_P_NODE_58231_length_255_cov_1.989011_g57272_i0 PRJNA944406 58231 255 1.989011 5.07197805 Methanobacteriota archaeon 2026739 Archaea Archaea 42.7 0.0404   NR MBT3651793.1 2026739 g57272 i0 46 0.588235294117647 50 23 58.8 2 80 229 208 253 MBT3651793.1 ABC transporter ATP-binding protein [Methanobacteriota archaeon] diamond 150 42.7 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
30278433 30278433 PRJNA944406_P_NODE_113252_length_226_cov_2.013072_g112293_i0 PRJNA944406 113252 226 2.013072 4.54954272 Methanogenium sp. S4BF 1789226 Archaea Archaea 42.4 0.0412   NR WP_278154310.1 1789226 g112293 i0 39.3 0.809734513274336 61 34 79.6 2 38 217 448 506 WP_278154310.1 serine/threonine-protein kinase [Methanogenium sp. S4BF] diamond 183 42.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanogenium Methanogenium sp. S4BF
31289140 31289140 PRJNA944406_P_NODE_82435_length_247_cov_0.885057_g81476_i0 PRJNA944406 82435 247 0.885057 2.18609079 Haladaptatus halobius 2884875 Archaea Archaea 64.7 3.6e-11   NR WP_227375586.1 2884875 g81476 i0 50 0.728744939271255 60 30 72.9 0 67 246 47 106 WP_227375586.1 KTSC domain-containing protein [Haladaptatus halobius] diamond 180 64.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haladaptataceae Haladaptatus Haladaptatus halobius
31479251 31479251 PRJNA944406_P_NODE_86156_length_246_cov_0.890173_g85197_i0 PRJNA944406 86156 246 0.890173 2.18982558 Halosimplex rubrum 869889 Archaea Archaea 42.7 0.0355   NR WP_179908788.1 869889 g85197 i0 36.4 0.804878048780488 66 38 75.6 1 211 26 93 158 WP_179908788.1 polysaccharide deacetylase family protein [Halosimplex rubrum] diamond 198 42.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halosimplex Halosimplex rubrum
32396621 32396621 PRJNA944406_P_NODE_85839_length_246_cov_0.890173_g84880_i0 PRJNA944406 85839 246 0.890173 2.18982558 Halococcus sp. 29286 Archaea Archaea 70.5 3.23e-14   NR HET7325487.1 29286 g84880 i0 81.8 0.536585365853659 44 8 53.7 0 175 44 1 44 HET7325487.1 hypothetical protein [Halococcus sp.] diamond 132 70.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;