RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where bioproject = "PRJNA944406" and tax_phylum = "Endomyxa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 12 ✖

tax_clade 1

bioproject 1

  • PRJNA944406 · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2200011 2200011 PRJNA944406_P_NODE_50522_length_262_cov_3.883598_g49563_i0 PRJNA944406 50522 262 3.883598 10.17502676 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 122 1.8e-23   NTclustered gi|1031965310|gb|KX011115.1| 37360 g49563 i0 97.222 2.66793893129771 72 2 27 0 1 72 7828 7899 Plasmodiophora brassicae isolate AT 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 699 122 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
2535029 2535029 PRJNA944406_P_NODE_12482_length_357_cov_3.975352_g11523_i0 PRJNA944406 12482 357 3.975352 14.19200664 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 649 0   NTclustered gi|15088520|gb|AF310898.1|AF310898 70182 g11523 i0 99.44 84.7927170868347 357 2 100 0 1 357 87 443 Polymyxa graminis 18S small subunit ribosomal RNA gene, partial sequence blastn 30271 649 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Polymyxa Polymyxa graminis
13678690 13678690 PRJNA944406_P_NODE_84131_length_246_cov_2.606936_g83172_i0 PRJNA944406 84131 246 2.606936 6.41306256 uncultured Pseudodifflugiidae 765885 SAR_Eukaryotes SAR_Eukaryotes 455 1.4500000000000002e-123   NTclustered gi|1915672690|emb|LR866303.1| 765885 g83172 i0 100 58.7073170731707 246 0 100 0 1 246 265 20 uncultured Pseudodifflugiidae partial 18S rRNA gene blastn 14442 455 1 Eukaryota Sar   Endomyxa   Gromiida Pseudodifflugiidae   uncultured Pseudodifflugiidae
15287288 15287288 PRJNA944406_P_NODE_15412_length_327_cov_6.944882_g14453_i0 PRJNA944406 15412 327 6.944882 22.70976414 Polymyxa 41455 SAR_Eukaryotes SAR_Eukaryotes 604 1.8799999999999993e-168   NTclustered gi|607252075|gb|KF111232.1| 70182 g14453 i0 100 92.4067278287462 327 0 100 0 1 327 729 403 Polymyxa graminis isolate PD0239 18S ribosomal RNA gene, partial sequence blastn 30217 604 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Polymyxa Polymyxa graminis
21326398 21326398 PRJNA944406_P_NODE_18877_length_302_cov_2.510917_g17918_i0 PRJNA944406 18877 302 2.510917 7.58296934 uncultured Leptophryidae 2603696 SAR_Eukaryotes SAR_Eukaryotes 459 1.4199999999999996e-124   NTclustered gi|1723855423|gb|MN324342.1| 2603696 g17918 i0 99.602 92.8543046357616 251 1 83 0 52 302 1 251 Uncultured Leptophryidae clone OTU1557 small subunit ribosomal RNA gene, partial sequence blastn 28042 459 1 Eukaryota Sar   Endomyxa   Vampyrellida Leptophryidae   uncultured Leptophryidae
25485921 25485921 PRJNA944406_P_NODE_113620_length_205_cov_4.628788_g112661_i0 PRJNA944406 113620 205 4.628788 9.4890154 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 374 3.3599999999999997e-99   NTclustered gi|1938230889|gb|MW296889.1| 70182 g112661 i0 99.512 98.6 205 1 100 0 1 205 229 25 Polymyxa graminis isolate CN_AH-i01 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 20213 374 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Polymyxa Polymyxa graminis
26835613 26835613 PRJNA944406_P_NODE_97461_length_243_cov_1.811765_g96502_i0 PRJNA944406 97461 243 1.811765 4.40258895 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 67 8.5e-11   NR SPQ96630.1 37360 g96502 i0 60.7 1.51851851851852 61 21 74.1 2 192 13 60 118 SPQ96630.1 unnamed protein product [Plasmodiophora brassicae] diamond 369 67 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
26968721 26968721 PRJNA944406_P_NODE_54722_length_259_cov_1.268817_g53763_i0 PRJNA944406 54722 259 1.268817 3.28623603 root 1 Root_unresolved Root_unresolved 48.9 3.14e-4   NR CEO95672.1 37360 g53763 i0 72.7 0.764478764478765 33 9 38.2 0 258 160 204 236 CEO95672.1 hypothetical protein PBRA_009680 [Plasmodiophora brassicae] diamond 198 48.9 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28699305 28699305 PRJNA944406_P_NODE_47487_length_265_cov_2.213542_g46528_i0 PRJNA944406 47487 265 2.213542 5.8658863 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 80.9 1.49e-15   NR CEP03657.1 37360 g46528 i0 74 0.566037735849057 50 13 56.6 0 71 220 121 170 CEP03657.1 hypothetical protein PBRA_003264 [Plasmodiophora brassicae] diamond 150 80.9 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30151493 30151493 PRJNA944406_P_NODE_92992_length_244_cov_2.274854_g92033_i0 PRJNA944406 92992 244 2.274854 5.55064376 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 67 1.01e-10   NR SPR01967.1 37360 g92033 i0 52.9 1.77049180327869 87 26 88.5 4 216 1 141 227 SPR01967.1 unnamed protein product [Plasmodiophora brassicae] diamond 432 67 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
31068186 31068186 PRJNA944406_P_NODE_84375_length_246_cov_1.780347_g83416_i0 PRJNA944406 84375 246 1.780347 4.37965362 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.0209   NR CEP00780.1 37360 g83416 i0 42.6 0.74390243902439 61 31 73.2 2 225 46 247 304 CEP00780.1 hypothetical protein PBRA_008092 [Plasmodiophora brassicae] diamond 183 43.5 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32459890 32459890 PRJNA944406_P_NODE_42499_length_270_cov_1.563452_g41540_i0 PRJNA944406 42499 270 1.563452 4.2213204 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 103 1.54e-23   NR CEP00412.1 37360 g41540 i0 57.3 0.988888888888889 89 37 97.8 1 268 5 158 246 CEP00412.1 hypothetical protein PBRA_001466 [Plasmodiophora brassicae] diamond 267 103 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;