RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA944406", tax_kingdom = "Thermotogati" and tax_phylum = "Thermotogota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermotogota · 2 ✖

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA944406 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8912207 8912207 PRJNA944406_P_NODE_25587_length_286_cov_1.446009_g24628_i0 PRJNA944406 25587 286 1.446009 4.13558574 root 1 Root_unresolved Root_unresolved 56.5 0.002   NTclustered gi|1786463335|dbj|AP019551.1| 1441386 g24628 i0 96.97 0.335664335664336 33 1 12 0 121 153 526792 526760 Athalassotoga saccharophila NAS-01 DNA, complete genome blastn 96 56.5 1 Bacteria   Thermotogati Thermotogota Thermotogae Mesoaciditogales Mesoaciditogaceae Athalassotoga Athalassotoga saccharophila
20385629 20385629 PRJNA944406_P_NODE_12576_length_356_cov_2.063604_g11617_i0 PRJNA944406 12576 356 2.063604 7.34643024 Thermotoga 2335 Bacteria Bacteria 228 5.219999999999999e-55   NTclustered gi|811641277|gb|CP011108.1| 2336 g11617 i0 78.63 138.483146067416 365 62 99 16 1 355 191308 190950 Thermotoga maritima strain Tma100, complete genome blastn 49300 228 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae Thermotoga Thermotoga maritima

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;