RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA944406", tax_kingdom = "Thermotogati" and tax_phylum = "Synergistota"

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tax_superkingdom 1

tax_phylum 1

  • Synergistota · 3 ✖

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA944406 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26676801 26676801 PRJNA944406_P_NODE_40701_length_272_cov_1.286432_g39742_i0 PRJNA944406 40701 272 1.286432 3.49909504 Synergistaceae bacterium 2053624 Bacteria Bacteria 46.6 2.82e-4   NR MCL1876061.1 2053624 g39742 i0 81.5 1.09191176470588 27 4 29.8 1 1 81 59 84 MCL1876061.1 transposase [Synergistaceae bacterium] diamond 297 46.6 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
29021989 29021989 PRJNA944406_P_NODE_89108_length_245_cov_1.627907_g88149_i0 PRJNA944406 89108 245 1.627907 3.98837215 FCB group 1783270 Bacteria Bacteria 97.1 4.35e-22   NR WP_051464215.1 290732 g88149 i0 57.5 9.20816326530612 80 34 98 0 245 6 211 290 WP_051464215.1 Gfo/Idh/MocA family oxidoreductase [Aminiphilus circumscriptus] diamond 2256 97.4 0.996919917864476 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminiphilaceae Aminiphilus Aminiphilus circumscriptus
31960227 31960227 PRJNA944406_P_NODE_93237_length_244_cov_1.801170_g92278_i0 PRJNA944406 93237 244 1.80117 4.3948548 PVC group 1783257 Bacteria Bacteria 57.4 2.94e-8   NR MDR1581263.1 2053624 g92278 i0 56.5 2.8155737704918 46 20 56.6 0 12 149 8 53 MDR1581263.1 DUF5615 family PIN-like protein [Synergistaceae bacterium] diamond 687 57.4 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;