RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA944406", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA944406 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2200349 2200349 PRJNA944406_P_NODE_85002_length_246_cov_1.410405_g84043_i0 PRJNA944406 85002 246 1.410405 3.4695963 Lentisphaerota bacterium 1932692 Bacteria Bacteria 150 4.67e-44   NR HHX98764.1 1932692 g84043 i0 98.8 0.975609756097561 80 1 97.6 0 245 6 19 98 HHX98764.1 50S ribosomal protein L4 [Lentisphaerota bacterium] diamond 240 150 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
30253523 30253523 PRJNA944406_P_NODE_89152_length_245_cov_1.593023_g88193_i0 PRJNA944406 89152 245 1.593023 3.90290635 Pseudomonadati 3379134 Bacteria Bacteria 102 6.15e-25   NR MBT3380326.1 1932692 g88193 i0 64 3.56326530612245 75 27 91.8 0 226 2 1 75 MBT3380326.1 TIGR00266 family protein [Lentisphaerota bacterium] diamond 873 103 0.990291262135922 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
31858508 31858508 PRJNA944406_P_NODE_81537_length_247_cov_0.885057_g80578_i0 PRJNA944406 81537 247 0.885057 2.18609079 Lentisphaerae bacterium GWF2_5 1932692 Bacteria Bacteria 105 3.86e-24   NR OGV55996.1 1798574 g80578 i0 61 0.995951417004049 82 32 99.6 0 2 247 254 335 OGV55996.1 MAG: hypothetical protein A2X45_21140 [Lentisphaerae bacterium GWF2_50_93] diamond 246 105 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerae bacterium GWF2_50_93

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;