RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA944406", tax_clade = "PVC group" and tax_phylum = "Kiritimatiellota"

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tax_superkingdom 1

tax_phylum 1

  • Kiritimatiellota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA944406 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3475818 3475818 PRJNA944406_P_NODE_95403_length_244_cov_0.900585_g94444_i0 PRJNA944406 95403 244 0.900585 2.1974274 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 155 2.86e-42   NR MCO5043668.1 2212473 g94444 i0 88.9 0.995901639344262 81 9 99.6 0 243 1 52 132 MCO5043668.1 methionine--tRNA ligase [Kiritimatiellia bacterium] diamond 243 155 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
27119861 27119861 PRJNA944406_P_NODE_43982_length_269_cov_1.239796_g43023_i0 PRJNA944406 43982 269 1.239796 3.33505124 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 83.6 1.74e-16   NR HMO05722.1 2212473 g43023 i0 50 0.936802973977695 84 42 93.7 0 7 258 219 302 HMO05722.1 glycosyltransferase [Kiritimatiellia bacterium] diamond 252 83.6 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
28888520 28888520 PRJNA944406_P_NODE_65928_length_251_cov_0.865169_g64969_i0 PRJNA944406 65928 251 0.865169 2.17157419 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 82 6.17e-16   NR MDA3925743.1 2212473 g64969 i0 59 0.99203187250996006 83 33 99.2 1 249 1 1035 1116 MDA3925743.1 autotransporter-associated beta strand repeat-containing protein [Kiritimatiellia bacterium] diamond 249 82 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;