RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA944406", tax_clade = "Metamonada" and tax_phylum = "Fornicata"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Fornicata · 2 ✖

tax_clade 1

  • Metamonada · 2 ✖

bioproject 1

  • PRJNA944406 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14013420 14013420 PRJNA944406_P_NODE_43811_length_269_cov_1.382653_g42852_i0 PRJNA944406 43811 269 1.382653 3.71933657 Giardia 5740 Fornicata other_Eukaryota 497 2.63e-136   NTclustered gi|1940865969|ref|XR_005248676.1| 5741 g42852 i0 100 11 269 0 100 0 1 269 836 1104 Giardia intestinalis 28S ribosomal RNA (GL50803_00r40029), partial rRNA blastn 2959 497 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
32648894 32648894 PRJNA944406_P_NODE_86480_length_246_cov_0.890173_g85521_i0 PRJNA944406 86480 246 0.890173 2.18982558 Carpediemonas membranifera 201153 Fornicata other_Eukaryota 49.3 1.92e-4   NR KAG9394630.1 201153 g85521 i0 44.4 0.548780487804878 45 20 48.8 1 29 148 809 853 KAG9394630.1 Periplasmic binding protein [Carpediemonas membranifera] diamond 135 49.3 1 Eukaryota Metamonada   Fornicata       Carpediemonas Carpediemonas membranifera

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;