RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA944406", tax_clade = "FCB group" and tax_phylum = "Candidatus Latescibacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Latescibacterota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA944406 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2199879 2199879 PRJNA944406_P_NODE_39242_length_273_cov_1.540000_g38283_i0 PRJNA944406 39242 273 1.54 4.2042 uncultured Latescibacterota bacterium 199737 Bacteria Bacteria 477 3.489999999999999e-130   NTclustered gi|781801701|emb|LN798285.1| 199737 g38283 i0 98.168 97.2271062271062 273 5 100 0 1 273 48 320 Uncultured Latescibacteria bacterium partial 16S rRNA gene, clone denovo9463 blastn 26543 477 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         uncultured Latescibacterota bacterium
15287395 15287395 PRJNA944406_P_NODE_49912_length_263_cov_1.621053_g48953_i0 PRJNA944406 49912 263 1.621053 4.26336939 Bacteria 2 Bacteria Bacteria 182 2.929999999999999e-41   NTclustered gi|2518550840|emb|OX638317.1| 199737 g48953 i0 81.07 391.600760456274 243 33 90 10 27 262 3962771 3963007 MAG: uncultured Latescibacteria bacterium isolate cbbe8a84-e08a-4d06-a76e-2eb930d8ff24 genome assembly, chromosome: 1 blastn 102991 182 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         uncultured Latescibacterota bacterium
27758977 27758977 PRJNA944406_P_NODE_24404_length_287_cov_1.742991_g23445_i0 PRJNA944406 24404 287 1.742991 5.00238417 Pseudomonadati 3379134 Bacteria Bacteria 129 1.23e-32   NR MSR81526.1 2053570 g23445 i0 61.7 5.94773519163763 94 36 98.3 0 284 3 377 470 MSR81526.1 pyridine nucleotide-disulfide oxidoreductase [Candidatus Latescibacterota bacterium] diamond 1707 130 0.992307692307692 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         Candidatus Latescibacterota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;