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contig_metadata

12 rows where bioproject = "PRJNA944406", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 12 ✖

tax_clade 1

  • Amoebozoa · 12 ✖

bioproject 1

  • PRJNA944406 · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
924613 924613 PRJNA944406_P_NODE_49321_length_264_cov_1.272251_g48362_i0 PRJNA944406 49321 264 1.272251 3.35874264 Orodruina flavescens 2873660 Tubulinea other_Eukaryota 171 6.38e-38   NTclustered gi|2873756681|gb|PQ811767.1| 2873660 g48362 i0 91.803 43.1022727272727 122 10 46 0 7 128 1545 1666 Orodruina flavescens internal transcribed spacer region, partial sequence blastn 11379 171 1 Eukaryota Amoebozoa   Tubulinea       Orodruina Orodruina flavescens
2200084 2200084 PRJNA944406_P_NODE_56962_length_256_cov_3.918033_g56003_i0 PRJNA944406 56962 256 3.918033 10.03016448 Paraflabellula hoguae 136459 Tubulinea other_Eukaryota 309 1.25e-79   NTclustered gi|145386791|gb|EF216916.1| 136459 g56003 i0 88.672 60.0625 256 26 99 3 1 255 124 377 Paraflabellula hoguae 28S large subunit ribosomal RNA gene, partial sequence blastn 15376 309 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Paraflabellula Paraflabellula hoguae
5087648 5087648 PRJNA944406_P_NODE_15764_length_324_cov_1.868526_g14805_i0 PRJNA944406 15764 324 1.868526 6.05402424 Hartmannellidae 5776 Tubulinea other_Eukaryota 577 4.0599999999999986e-160   NTclustered gi|11527309|gb|AF293902.1|AF293902 136464 g14805 i0 98.765 81.2006172839506 324 4 100 0 1 324 1403 1726 Saccamoeba limax small subunit ribosomal RNA gene, complete sequence blastn 26309 582 0.991408934707904 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba limax
11127932 11127932 PRJNA944406_P_NODE_20929_length_291_cov_2.050459_g19970_i0 PRJNA944406 20929 291 2.050459 5.96683569 Rhizamoeba saxonica 200886 Tubulinea other_Eukaryota 91.6 5.71e-14   NTclustered gi|300078497|gb|GU001159.1| 200886 g19970 i0 93.548 17.8625429553265 62 3 21 1 230 291 4314 4254 Rhizamoeba saxonica 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 5198 91.6 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba saxonica
12403833 12403833 PRJNA944406_P_NODE_54330_length_259_cov_1.645161_g53371_i0 PRJNA944406 54330 259 1.645161 4.26096699 Polychaos centronucleolus 2762048 Tubulinea other_Eukaryota 409 1.22e-109   NTclustered gi|1887703455|gb|MT874850.1| 2762048 g53371 i0 95.331 98.2857142857143 257 12 99 0 3 259 420 164 Polychaos centronucleolus strain DKis1.1 small subunit ribosomal RNA gene, partial sequence blastn 25456 409 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Polychaos Polychaos centronucleolus
14013289 14013289 PRJNA944406_P_NODE_11271_length_372_cov_2.568562_g10312_i0 PRJNA944406 11271 372 2.568562 9.55505064 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 134 1.23e-26   NTclustered gi|300078496|gb|GU001158.1| 5778 g10312 i0 89.623 24.744623655914 106 10 28 1 83 188 883 987 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 9205 135 0.992592592592593 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
16227284 16227284 PRJNA944406_P_NODE_25473_length_286_cov_1.446009_g24514_i0 PRJNA944406 25473 286 1.446009 4.13558574 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 207 5.33e-49   NTclustered gi|292559443|ref|NC_013986.1| 5778 g24514 i0 85.5 120.51048951049 200 27 70 2 2 200 27333 27531 Hartmannella vermiformis mitochondrion, complete genome blastn 34466 207 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
16227321 16227321 PRJNA944406_P_NODE_28713_length_283_cov_1.466667_g27754_i0 PRJNA944406 28713 283 1.466667 4.15066761 Spumochlamys perforata 675831 Tubulinea other_Eukaryota 145 4.19e-30   NTclustered gi|259595675|gb|FJ705339.1| 675831 g27754 i0 88.43 28.8939929328622 121 13 42 1 115 234 1894 1774 Spumochlamys perforata clone 2504 18S ribosomal RNA gene, partial sequence blastn 8177 145 1 Eukaryota Amoebozoa   Tubulinea Corycida   Microchlamyiidae Spumochlamys Spumochlamys perforata
17836817 17836817 PRJNA944406_P_NODE_34214_length_278_cov_1.356098_g33255_i0 PRJNA944406 34214 278 1.356098 3.76995244 Cryptodifflugia 1078833 Tubulinea other_Eukaryota 497 2.73e-136   NTclustered gi|345294024|gb|JF694280.1| 1078836 g33255 i0 98.921 94.705035971223 278 3 100 0 1 278 1801 1524 Cryptodifflugia operculata small subunit ribosomal RNA gene, partial sequence blastn 26328 497 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
21661754 21661754 PRJNA944406_P_NODE_5597_length_545_cov_4.372881_g4648_i0 PRJNA944406 5597 545 4.372881 23.83220145 Hartmannellidae 5776 Tubulinea other_Eukaryota 863 0   NTclustered gi|11527309|gb|AF293902.1|AF293902 136464 g4648 i0 98.765 51.8183486238532 486 4 89 2 3 486 487 2 Saccamoeba limax small subunit ribosomal RNA gene, complete sequence blastn 28241 869 0.993095512082854 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba limax
23877456 23877456 PRJNA944406_P_NODE_7019_length_477_cov_1.396040_g6063_i0 PRJNA944406 7019 477 1.39604 6.6591108 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 368 4.06e-97   NTclustered gi|511487963|gb|JX898537.1| 1260765 g6063 i0 84.514 32.2452830188679 381 49 79 7 72 450 373 1 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 15381 368 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
32245344 32245344 PRJNA944406_P_NODE_27018_length_285_cov_1.183962_g26059_i0 PRJNA944406 27018 285 1.183962 3.3742917 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 110 1.7700000000000002e-27   NR AFX73094.1 1260108 g26059 i0 77 2.56842105263158 61 14 64.2 0 185 3 194 254 AFX73094.1 elongation factor 2 alpha, partial [Lesquereusia modesta] diamond 732 110 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Lesquereusiidae Lesquereusia Lesquereusia modesta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;