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contig_metadata

12 rows where bioproject = "PRJNA944150" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 12 ✖

tax_clade 1

bioproject 1

  • PRJNA944150 · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1259202 1259202 PRJNA944150_P_NODE_5861_length_354_cov_2.960656_g5610_i0 PRJNA944150 5861 354 2.960656 10.48072224 Albugo 65356 SAR_Eukaryotes SAR_Eukaryotes 73.1 2.57e-8   NTclustered gi|325183295|emb|FR824085.1| 890382 g5610 i0 92.157 0.742937853107345 51 4 17 0 208 258 34707 34757 Albugo laibachii Nc14, genomic contig CONTIG_40_NC14_v4_133649_231 blastn 263 73.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
10187854 10187854 PRJNA944150_P_NODE_34668_length_168_cov_4.689076_g34417_i0 PRJNA944150 34668 168 4.689076 7.87764768 root 1 Root_unresolved Root_unresolved 311 2.11e-80   NTclustered gi|166044486|emb|CU367395.1| 100861 g34417 i0 100 99.1785714285714 168 0 100 0 1 168 507 340 Aphanomyces euteiches cDNA blastn 16662 311 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
12738490 12738490 PRJNA944150_P_NODE_29710_length_178_cov_1.186047_g29459_i0 PRJNA944150 29710 178 1.186047 2.11116366 root 1 Root_unresolved Root_unresolved 329 6.21e-86   NTclustered gi|166046580|emb|CU367697.1| 100861 g29459 i0 100 99.7808988764045 178 0 100 0 1 178 290 467 Aphanomyces euteiches cDNA blastn 17761 329 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
14013125 14013125 PRJNA944150_P_NODE_37171_length_166_cov_1.367521_g36920_i0 PRJNA944150 37171 166 1.367521 2.27008486 root 1 Root_unresolved Root_unresolved 302 1.2500000000000001e-77   NTclustered gi|166045068|emb|CU367574.1| 100861 g36920 i0 99.398 97.2289156626506 166 1 100 0 1 166 40 205 Aphanomyces euteiches cDNA blastn 16140 302 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
16561532 16561532 PRJNA944150_P_NODE_16513_length_210_cov_5.198758_g16262_i0 PRJNA944150 16513 210 5.198758 10.9173918 root 1 Root_unresolved Root_unresolved 185 1.74e-42   NTclustered gi|166046639|emb|CU367756.1| 100861 g16262 i0 100 49.7190476190476 100 0 48 0 1 100 223 124 Aphanomyces euteiches cDNA blastn 10441 185 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
20050343 20050343 PRJNA944150_P_NODE_40556_length_164_cov_0.886957_g40305_i0 PRJNA944150 40556 164 0.886957 1.45460948 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 303 3.42e-78   NTclustered gi|166046474|emb|CU367591.1| 100861 g40305 i0 100 97.890243902439 164 0 100 0 1 164 372 209 Aphanomyces euteiches cDNA blastn 16054 303 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
20385323 20385323 PRJNA944150_P_NODE_18936_length_203_cov_1.428571_g18685_i0 PRJNA944150 18936 203 1.428571 2.89999913 root 1 Root_unresolved Root_unresolved 320 4.39e-83   NTclustered gi|166044580|emb|CU367489.1| 100861 g18685 i0 95.074 98.9014778325123 203 10 100 0 1 203 404 202 Aphanomyces euteiches cDNA blastn 20077 320 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
20385515 20385515 PRJNA944150_P_NODE_48296_length_151_cov_2.500000_g48045_i0 PRJNA944150 48296 151 2.5 3.775 root 1 Root_unresolved Root_unresolved 279 5.19e-71   NTclustered gi|166046591|emb|CU367708.1| 100861 g48045 i0 100 97.4304635761589 151 0 100 0 1 151 343 193 Aphanomyces euteiches cDNA blastn 14712 279 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
21661294 21661294 PRJNA944150_P_NODE_20717_length_197_cov_3.425676_g20466_i0 PRJNA944150 20717 197 3.425676 6.74858172 root 1 Root_unresolved Root_unresolved 187 4.4799999999999984e-43   NTclustered gi|166046679|emb|CU367789.1| 100861 g20466 i0 95.041 38.6345177664975 121 2 88 4 1 117 361 241 Aphanomyces euteiches cDNA blastn 7611 187 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
25485643 25485643 PRJNA944150_P_NODE_25280_length_186_cov_1.489051_g25029_i0 PRJNA944150 25280 186 1.489051 2.76963486 root 1 Root_unresolved Root_unresolved 327 2.36e-85   NTclustered gi|166046646|emb|CU367763.1| 100861 g25029 i0 98.387 74.1290322580645 186 3 100 0 1 186 462 277 Aphanomyces euteiches cDNA blastn 13788 327 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
25485688 25485688 PRJNA944150_P_NODE_31400_length_174_cov_3.384000_g31149_i0 PRJNA944150 31400 174 3.384 5.88816 root 1 Root_unresolved Root_unresolved 322 1.01e-83   NTclustered gi|166046467|emb|CU367584.1| 100861 g31149 i0 100 43.7241379310345 174 0 100 0 1 174 379 206 Aphanomyces euteiches cDNA blastn 7608 322 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
31763618 31763618 PRJNA944150_P_NODE_32277_length_173_cov_1.395161_g32026_i0 PRJNA944150 32277 173 1.395161 2.41362853 [Pythium] brassicae (nom. inval.) 1485010 SAR_Eukaryotes SAR_Eukaryotes 47 4.64e-4   NR TYZ52209.1 1485010 g32026 i0 44.6 3.90173410404624 56 31 97.1 0 168 1 470 525 TYZ52209.1 hypothetical protein PybrP1_008277 [[Pythium] brassicae (nom. inval.)] diamond 675 47 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium [Pythium] brassicae (nom. inval.)

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;