RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA944150" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA944150 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21325641 21325641 PRJNA944150_P_NODE_21597_length_194_cov_3.282759_g21346_i0 PRJNA944150 21597 194 3.282759 6.36855246 Mycoplasmatota bacterium WC44 3076018 Bacteria Bacteria 82.4 2.14e-11   NTclustered gi|2878023906|gb|CP134881.1| 3076018 g21346 i0 92.857 1.17010309278351 56 4 29 0 59 114 1822792 1822737 Mycoplasmatota bacterium WC44 chromosome, complete genome blastn 227 82.4 1 Bacteria   Bacillati Mycoplasmatota         Mycoplasmatota bacterium WC44
21325862 21325862 PRJNA944150_P_NODE_40477_length_164_cov_0.886957_g40226_i0 PRJNA944150 40477 164 0.886957 1.45460948 Candidatus Izemoplasmatales bacterium 3018265 Bacteria Bacteria 110 1.08e-28   NR MDD3712936.1 3018265 g40226 i0 100 0.98780487804878 54 0 98.8 0 164 3 58 111 MDD3712936.1 Holliday junction resolvase RecU [Candidatus Izemoplasmatales bacterium] diamond 162 110 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Candidatus Izemoplasmatales     Candidatus Izemoplasmatales bacterium
22600753 22600753 PRJNA944150_P_NODE_3798_length_438_cov_3.002571_g3549_i0 PRJNA944150 3798 438 3.002571 13.15126098 Spiroplasma tabanidicola 324079 Bacteria Bacteria 52.8 0.042   NTclustered gi|1780488998|gb|CP046276.1| 324079 g3549 i0 100 0.0639269406392694 28 0 6 0 345 372 573137 573110 Spiroplasma tabanidicola strain TAUS-1 chromosome, complete genome blastn 28 52.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma tabanidicola
30625433 30625433 PRJNA944150_P_NODE_36713_length_166_cov_3.042735_g36462_i0 PRJNA944150 36713 166 3.042735 5.0509401 Spiroplasma endosymbiont of Megaselia nigra 2478537 Bacteria Bacteria 41.2 0.047   NR WP_158613844.1 2478537 g36462 i0 42.6 0.849397590361446 47 27 84.9 0 160 20 152 198 WP_158613844.1 C39 family peptidase [Spiroplasma endosymbiont of Megaselia nigra] diamond 141 41.2 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma endosymbiont of Megaselia nigra

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;