RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA944150", tax_kingdom = "Viridiplantae" and tax_phylum = "Chlorophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 3 ✖

tax_kingdom 1

  • Viridiplantae · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA944150 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7301644 7301644 PRJNA944150_P_NODE_25546_length_185_cov_3.794118_g25295_i0 PRJNA944150 25546 185 3.794118 7.0191183 Myrmecia israelensis 3171 Plants Plants 342 8.369999999999999e-90   NTclustered gi|723456786|ref|NC_025525.1| 3171 g25295 i0 100 1 185 0 100 0 1 185 16903 17087 Myrmecia israelensis culture-collection UTEX:1181 chloroplast, complete genome blastn 185 342 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia Myrmecia israelensis
17836582 17836582 PRJNA944150_P_NODE_40994_length_164_cov_0.886957_g40743_i0 PRJNA944150 40994 164 0.886957 1.45460948 Eukaryota 2759 Plants Plants 121 3.7e-23   NTclustered gi|2720903844|gb|PP723113.1| 3161 g40743 i0 91.86 52.4573170731707 86 7 52 0 79 164 2406 2321 Tetraselmis subcordiformis strain P-043 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 8603 122 0.991803278688525 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorodendrophyceae Chlorodendrales Chlorodendraceae Tetraselmis Tetraselmis subcordiformis
32459849 32459849 PRJNA944150_P_NODE_38299_length_165_cov_2.163793_g38048_i0 PRJNA944150 38299 165 2.163793 3.57025845 Apatococcus lobatus 904363 Plants Plants 99.8 1.08e-22   NR KAK9817554.1 904363 g38048 i0 100 0.981818181818182 54 0 98.2 0 3 164 899 952 KAK9817554.1 hypothetical protein WJX74_004784 [Apatococcus lobatus] diamond 162 99.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Apatococcus Apatococcus lobatus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;