RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA944150", tax_kingdom = "Thermotogati" and tax_phylum = "Synergistota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Synergistota · 2 ✖

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA944150 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26645218 26645218 PRJNA944150_P_NODE_28081_length_181_cov_1.371212_g27830_i0 PRJNA944150 28081 181 1.371212 2.48189372 uncultured Fretibacterium sp. 1678694 Bacteria Bacteria 120 9.71e-32   NR WP_299297841.1 1678694 g27830 i0 98.3 0.994475138121547 60 1 99.4 0 2 181 129 188 WP_299297841.1 IclR family transcriptional regulator [uncultured Fretibacterium sp.] diamond 180 120 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.
30373225 30373225 PRJNA944150_P_NODE_23552_length_189_cov_1.678571_g23301_i0 PRJNA944150 23552 189 1.678571 3.17249919 Jonquetella 428711 Bacteria Bacteria 120 4.31e-32   NR WP_196792679.1 428711 g23301 i0 100 0.984126984126984 62 0 98.4 0 2 187 95 156 WP_196792679.1 MULTISPECIES: PAQR family membrane homeostasis protein TrhA [Jonquetella] diamond 186 120 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Jonquetella  

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;