RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA944150", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 10 ✖

tax_kingdom 1

  • Pseudomonadati · 10 ✖

bioproject 1

  • PRJNA944150 · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17501676 17501676 PRJNA944150_P_NODE_17534_length_210_cov_2.360248_g17283_i0 PRJNA944150 17534 210 2.360248 4.9565208 Desulfobulbus oligotrophicus 1909699 Bacteria Bacteria 119 1.79e-22   NTclustered gi|1951276582|gb|CP054140.1| 1909699 g17283 i0 94.737 0.509523809523809 76 4 36 0 135 210 1232686 1232611 Desulfobulbus oligotrophicus strain Prop6 chromosome, complete genome blastn 107 119 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfobulbus Desulfobulbus oligotrophicus
17501946 17501946 PRJNA944150_P_NODE_42554_length_162_cov_5.265487_g42303_i0 PRJNA944150 42554 162 5.265487 8.53008894 Desulfobulbus oralis 1986146 Bacteria Bacteria 54.7 0.004   NTclustered gi|1343450889|gb|CP021255.1| 1986146 g42303 i0 78.652 0.728395061728395 89 13 56 6 46 131 1109106 1109191 Desulfobulbus oralis strain HOT041/ORNL chromosome, complete genome blastn 118 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfobulbus Desulfobulbus oralis
23876042 23876042 PRJNA944150_P_NODE_22619_length_191_cov_2.042254_g22368_i0 PRJNA944150 22619 191 2.042254 3.90070514 Nitratidesulfovibrio liaohensis 2604158 Bacteria Bacteria 326 8.77e-85   NTclustered gi|2575677524|gb|CP133659.1| 2604158 g22368 i0 97.382 7.93193717277487 191 5 100 0 1 191 2982999 2982809 Nitratidesulfovibrio liaohensis strain KPS chromosome, complete genome blastn 1515 326 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Nitratidesulfovibrio Nitratidesulfovibrio liaohensis
27214711 27214711 PRJNA944150_P_NODE_32622_length_172_cov_2.211382_g32371_i0 PRJNA944150 32622 172 2.211382 3.80357704 Smithella sp. 2053614 Bacteria Bacteria 45.4 0.00154   NR MEN6621316.1 2053614 g32371 i0 70 0.523255813953488 30 9 52.3 0 1 90 100 129 MEN6621316.1 hypothetical protein [Smithella sp.] diamond 90 45.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Smithellaceae Smithella Smithella sp.
27562170 27562170 PRJNA944150_P_NODE_4004_length_427_cov_3.013228_g3755_i0 PRJNA944150 4004 427 3.013228 12.86648356 Smithella sp. 2053614 Bacteria Bacteria 74.3 1.33e-12   NR MEN6621319.1 2053614 g3755 i0 80.9 0.330210772833724 47 9 33 0 2 142 242 288 MEN6621319.1 hypothetical protein [Smithella sp.] diamond 141 74.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Smithellaceae Smithella Smithella sp.
27821999 27821999 PRJNA944150_P_NODE_14844_length_221_cov_2.372093_g14593_i0 PRJNA944150 14844 221 2.372093 5.24232553 Pseudomonadati 3379134 Bacteria Bacteria 109 6.68e-28   NR WP_164561688.1 881 g14593 i0 69.9 11.8642533936652 73 22 99.1 0 3 221 124 196 WP_164561688.1 transglycosylase SLT domain-containing protein [Nitratidesulfovibrio vulgaris] diamond 2622 110 0.990909090909091 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Nitratidesulfovibrio Nitratidesulfovibrio vulgaris
28667655 28667655 PRJNA944150_P_NODE_23387_length_189_cov_2.900000_g23136_i0 PRJNA944150 23387 189 2.9 5.481 Smithella sp. 2053614 Bacteria Bacteria 89.7 1.39e-19   NR MEN6621319.1 2053614 g23136 i0 77.6 0.920634920634921 58 13 92.1 0 4 177 102 159 MEN6621319.1 hypothetical protein [Smithella sp.] diamond 174 89.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Smithellaceae Smithella Smithella sp.
29488241 29488241 PRJNA944150_P_NODE_40330_length_164_cov_0.886957_g40079_i0 PRJNA944150 40330 164 0.886957 1.45460948 Desulfohalobiaceae bacterium 2683721 Bacteria Bacteria 43.1 0.00934   NR MCF8029715.1 2683721 g40079 i0 90.9 0.804878048780488 22 2 40.2 0 67 2 1 22 MCF8029715.1 tyrosine--tRNA ligase [Desulfohalobiaceae bacterium] diamond 132 43.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfohalobiaceae   Desulfohalobiaceae bacterium
32435179 32435179 PRJNA944150_P_NODE_14759_length_222_cov_1.179191_g14508_i0 PRJNA944150 14759 222 1.179191 2.61780402 Pseudomonadati 3379134 Bacteria Bacteria 77.8 1.32e-15   NR PLX94609.1 892 g14508 i0 63.9 9.13513513513514 61 22 82.4 0 183 1 1 61 PLX94609.1 MAG: methyltransferase [Desulfuromonas sp.] diamond 2028 77.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas sp.
32813304 32813304 PRJNA944150_P_NODE_6960_length_325_cov_2.967391_g6709_i0 PRJNA944150 6960 325 2.967391 9.64402075 Bacteria 2 Bacteria Bacteria 43.9 0.0358   NR MCK5231445.1 2053307 g6709 i0 32.2 1.71692307692308 90 57 83.1 2 50 319 137 222 MCK5231445.1 HAMP domain-containing protein [Desulfobulbaceae bacterium] diamond 558 43.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae   Desulfobulbaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;