RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA944150", tax_clade = "Opisthokonta" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA944150 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30214685 30214685 PRJNA944150_P_NODE_40312_length_164_cov_0.886957_g40061_i0 PRJNA944150 40312 164 0.886957 1.45460948 Kappamyces sp. JEL 2040833 Fungi Fungi 77 1.82e-15   NR KAJ3306925.1 2724216 g40061 i0 56.6 0.969512195121951 53 23 97 0 163 5 19 71 KAJ3306925.1 hypothetical protein HDV03_003248 [Kappamyces sp. JEL0829] diamond 159 77 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Kappamycetaceae Kappamyces Kappamyces sp. JEL0829
31763622 31763622 PRJNA944150_P_NODE_40797_length_164_cov_0.886957_g40546_i0 PRJNA944150 40797 164 0.886957 1.45460948 Phlyctochytrium bullatum 1352834 Fungi Fungi 80.5 2.55e-17   NR KAJ3097836.1 1352834 g40546 i0 63 1.95731707317073 54 20 98.8 0 163 2 95 148 KAJ3097836.1 hypothetical protein HDU96_000239 [Phlyctochytrium bullatum] diamond 321 80.5 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Phlyctochytrium Phlyctochytrium bullatum
31921785 31921785 PRJNA944150_P_NODE_15197_length_219_cov_0.858824_g14946_i0 PRJNA944150 15197 219 0.858824 1.88082456 Chytridiales sp. JEL 2011832 Fungi Fungi 42.4 0.0378   NR KAJ3412701.1 2786947 g14946 i0 41.3 0.63013698630137 46 27 63 0 53 190 199 244 KAJ3412701.1 hypothetical protein HDV05_000329 [Chytridiales sp. JEL 0842] diamond 138 42.4 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales     Chytridiales sp. JEL 0842

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;