RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA942359" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA942359 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9851205 9851205 PRJNA942359_P_NODE_9948_length_281_cov_1.432692_g9833_i0 PRJNA942359 9948 281 1.432692 4.02586452 Rubrivirga sp. IMCC45206 3391614 Bacteria Bacteria 322 1.79e-83   NTclustered gi|2890849321|gb|CP177357.1| 3391614 g9833 i0 87.589 91.8967971530249 282 29 99 6 3 279 3831972 3831692 Rubrivirga sp. IMCC45206 chromosome, complete genome blastn 25823 322 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC45206
13676697 13676697 PRJNA942359_P_NODE_19371_length_243_cov_0.917647_g19256_i0 PRJNA942359 19371 243 0.917647 2.22988221 Rhodocaloribacter litoris 2558931 Bacteria Bacteria 230 9.43e-56   NTclustered gi|2076465437|gb|CP076718.1| 2558931 g19256 i0 88.083 20.9753086419753 193 23 79 0 51 243 3822686 3822494 Rhodocaloribacter litoris strain ISCAR-4553 chromosome blastn 5097 230 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodocaloribacter Rhodocaloribacter litoris
15286713 15286713 PRJNA942359_P_NODE_12032_length_261_cov_1.228723_g11917_i0 PRJNA942359 12032 261 1.228723 3.20696703 Rubrivirga 1434037 Bacteria Bacteria 303 5.95e-78   NTclustered gi|2874254104|emb|OY970187.1| 2838334 g11917 i0 87.786 613.804597701149 262 29 100 3 1 261 1308318 1308059 MAG: Rubricoccaceae bacterium isolate MFD03250.bin.2.52 genome assembly, chromosome: 1 blastn 160203 305 0.99344262295082 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;