contig_metadata
15 rows where bioproject = "PRJNA942359" and tax_phylum = "Nitrospirota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 922987 | 922987 | PRJNA942359_P_NODE_19841_length_242_cov_1.029586_g19726_i0 | PRJNA942359 | 19841 | 242 | 1.029586 | 2.49159812 | Nitrospira sp. | 70125 | Bacteria | Bacteria | 176 | 1.24e-39 | NTclustered | gi|2194428397|gb|CP092079.1| | 70125 | g19726 | i0 | 80.162 | 1.97520661157025 | 247 | 39 | 100 | 9 | 1 | 242 | 393502 | 393743 | MAG: Nitrospira sp. isolate UBC3 chromosome | blastn | 478 | 176 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. | ||
| 2198360 | 2198360 | PRJNA942359_P_NODE_20502_length_235_cov_2.209877_g20387_i0 | PRJNA942359 | 20502 | 235 | 2.209877 | 5.19321095 | Nitrospira sp. | 70125 | Bacteria | Bacteria | 313 | 8.75e-81 | NTclustered | gi|2194428397|gb|CP092079.1| | 70125 | g20387 | i0 | 90.638 | 2.9531914893617 | 235 | 22 | 100 | 0 | 1 | 235 | 2488386 | 2488620 | MAG: Nitrospira sp. isolate UBC3 chromosome | blastn | 694 | 313 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. | ||
| 11126589 | 11126589 | PRJNA942359_P_NODE_17829_length_246_cov_0.901734_g17714_i0 | PRJNA942359 | 17829 | 246 | 0.901734 | 2.21826564 | Nitrospirota bacterium | 2026887 | Bacteria | Bacteria | 160 | 9.04e-47 | NR | MCE9535777.1 | 2026887 | g17714 | i0 | 97.6 | 2 | 82 | 2 | 100 | 0 | 246 | 1 | 182 | 263 | MCE9535777.1 ATP-grasp domain-containing protein [Nitrospirota bacterium] | diamond | 492 | 160 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospirota bacterium | ||||||
| 11462625 | 11462625 | PRJNA942359_P_NODE_18969_length_244_cov_0.912281_g18854_i0 | PRJNA942359 | 18969 | 244 | 0.912281 | 2.22596564 | Nitrospira | 1234 | Bacteria | Bacteria | 429 | 8.699999999999998e-116 | NTclustered | gi|2290906964|gb|CP058931.1| | 70125 | g18854 | i0 | 98.361 | 5.82786885245902 | 244 | 4 | 100 | 0 | 1 | 244 | 707633 | 707876 | MAG: Nitrospira sp. isolate DJ chromosome | blastn | 1422 | 429 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. | ||
| 13676614 | 13676614 | PRJNA942359_P_NODE_15491_length_249_cov_0.886364_g15376_i0 | PRJNA942359 | 15491 | 249 | 0.886364 | 2.20704636 | Nitrospira sp. | 70125 | Bacteria | Bacteria | 257 | 4.45e-64 | NTclustered | gi|2863129529|dbj|AP038806.1| | 70125 | g15376 | i0 | 86.134 | 7.60642570281125 | 238 | 33 | 96 | 0 | 7 | 244 | 1842685 | 1842448 | MAG: Nitrospira sp. NFB02 DNA, complete genome | blastn | 1894 | 257 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. | ||
| 14950916 | 14950916 | PRJNA942359_P_NODE_17192_length_247_cov_0.873563_g17077_i0 | PRJNA942359 | 17192 | 247 | 0.873563 | 2.15770061 | Candidatus Nitrospira allomarina | 3020900 | Bacteria | Bacteria | 200 | 7.529999999999999e-47 | NTclustered | gi|2582126190|gb|CP116967.1| | 3020900 | g17077 | i0 | 86.022 | 0.753036437246964 | 186 | 26 | 75 | 0 | 62 | 247 | 2306419 | 2306604 | Candidatus Nitrospira allomarina strain VA chromosome, complete genome | blastn | 186 | 200 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Candidatus Nitrospira allomarina | ||
| 16225777 | 16225777 | PRJNA942359_P_NODE_10993_length_270_cov_3.060914_g10878_i0 | PRJNA942359 | 10993 | 270 | 3.060914 | 8.2644678 | Candidatus Nitrospira neomarina | 3020899 | Bacteria | Bacteria | 340 | 4.719999999999999e-89 | NTclustered | gi|2582130041|gb|CP116968.1| | 3020899 | g10878 | i0 | 89.377 | 3.03333333333333 | 273 | 25 | 100 | 3 | 1 | 270 | 2788660 | 2788389 | Candidatus Nitrospira neomarina strain DK chromosome, complete genome | blastn | 819 | 340 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Candidatus Nitrospira neomarina | ||
| 16226050 | 16226050 | PRJNA942359_P_NODE_6293_length_336_cov_1.262357_g6178_i0 | PRJNA942359 | 6293 | 336 | 1.262357 | 4.24151952 | uncultured Nitrospira sp. | 157176 | Bacteria | Bacteria | 199 | 4.97e-61 | NR | WP_342349387.1 | 157176 | g6178 | i0 | 90.8 | 1.94642857142857 | 109 | 10 | 97.3 | 0 | 327 | 1 | 1 | 109 | WP_342349387.1 alpha/beta hydrolase [uncultured Nitrospira sp.] | diamond | 654 | 199 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | uncultured Nitrospira sp. | ||
| 18774729 | 18774729 | PRJNA942359_P_NODE_17735_length_246_cov_0.901734_g17620_i0 | PRJNA942359 | 17735 | 246 | 0.901734 | 2.21826564 | Candidatus Nitrospira kreftii | 2652173 | Bacteria | Bacteria | 455 | 1.4500000000000002e-123 | NTclustered | gi|1884724763|gb|CP047423.1| | 2652173 | g17620 | i0 | 100 | 1 | 246 | 0 | 100 | 0 | 1 | 246 | 867154 | 867399 | Candidatus Nitrospira kreftii isolate comreactor17 chromosome, complete genome | blastn | 246 | 455 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Candidatus Nitrospira kreftii | ||
| 25149029 | 25149029 | PRJNA942359_P_NODE_10000_length_280_cov_3.352657_g9885_i0 | PRJNA942359 | 10000 | 280 | 3.352657 | 9.3874396 | Nitrospira japonica | 1325564 | Bacteria | Bacteria | 316 | 8.289999999999998e-82 | NTclustered | gi|1167499077|emb|LT828648.1| | 1325564 | g9885 | i0 | 87.143 | 10.9321428571429 | 280 | 34 | 100 | 2 | 1 | 280 | 982336 | 982613 | Nitrospira japonica isolate Genome sequencing of Nitrospira japonica strain NJ11 genome assembly, chromosome: I | blastn | 3061 | 316 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira japonica | ||
| 28548229 | 28548229 | PRJNA942359_P_NODE_17367_length_246_cov_0.901734_g17252_i0 | PRJNA942359 | 17367 | 246 | 0.901734 | 2.21826564 | Nitrospira | 1234 | Bacteria | Bacteria | 125 | 4.02e-34 | NR | TKB52926.1 | 70125 | g17252 | i0 | 86.4 | 2.8780487804878 | 59 | 8 | 72 | 0 | 179 | 3 | 1 | 59 | TKB52926.1 MAG: hypothetical protein E8D50_09080 [Nitrospira sp.] | diamond | 708 | 125 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. | ||
| 29116469 | 29116469 | PRJNA942359_P_NODE_18408_length_245_cov_0.906977_g18293_i0 | PRJNA942359 | 18408 | 245 | 0.906977 | 2.22209365 | Nitrospira | 1234 | Bacteria | Bacteria | 133 | 1.81e-38 | NR | ULA59642.1 | 70125 | g18293 | i0 | 92.4 | 3.23265306122449 | 66 | 5 | 80.8 | 0 | 243 | 46 | 31 | 96 | ULA59642.1 MAG: Cytoplasmic protein [Nitrospira sp.] | diamond | 792 | 133 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. | ||
| 30214654 | 30214654 | PRJNA942359_P_NODE_10552_length_275_cov_1.544554_g10437_i0 | PRJNA942359 | 10552 | 275 | 1.544554 | 4.2475235 | Candidatus Nitrobium versatile | 2884831 | Bacteria | Bacteria | 75.1 | 2.31e-13 | NR | MBZ0154906.1 | 2884831 | g10437 | i0 | 87.2 | 0.425454545454545 | 39 | 5 | 42.5 | 0 | 275 | 159 | 1069 | 1107 | MBZ0154906.1 DUF499 domain-containing protein [Candidatus Nitrobium versatile] | diamond | 117 | 75.1 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Candidatus Nitrobium | Candidatus Nitrobium versatile | ||
| 30695512 | 30695512 | PRJNA942359_P_NODE_6613_length_330_cov_0.898833_g6498_i0 | PRJNA942359 | 6613 | 330 | 0.898833 | 2.9661489 | Bacteria | 2 | Bacteria | Bacteria | 43.1 | 0.0412 | NR | MEC4672313.1 | 2026887 | g6498 | i0 | 36.9 | 1.43636363636364 | 84 | 49 | 72.7 | 2 | 87 | 326 | 10 | 93 | MEC4672313.1 DUF192 domain-containing protein [Nitrospirota bacterium] | diamond | 474 | 43.5 | 0.990804597701149 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospirota bacterium | ||||||
| 32586354 | 32586354 | PRJNA942359_P_NODE_17819_length_246_cov_0.901734_g17704_i0 | PRJNA942359 | 17819 | 246 | 0.901734 | 2.21826564 | Nitrospira lenta | 1436998 | Bacteria | Bacteria | 104 | 1.5600000000000002e-26 | NR | WP_121988829.1 | 1436998 | g17704 | i0 | 91.7 | 0.731707317073171 | 60 | 5 | 73.2 | 0 | 182 | 3 | 1 | 60 | WP_121988829.1 hypothetical protein [Nitrospira lenta] | diamond | 180 | 104 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira lenta |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;