RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA942359" and tax_phylum = "Mollusca"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA942359 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11462650 11462650 PRJNA942359_P_NODE_3269_length_439_cov_2.398907_g3154_i0 PRJNA942359 3269 439 2.398907 10.53120173 Metazoa 33208 Mollusca Mollusca 784 0   NTclustered gi|1928112764|gb|MT947788.1| 6523 g3154 i0 98.861 99.997722095672 439 5 100 0 1 439 1611 1173 Lymnaea stagnalis isolate Lsta_434075 hypothetical protein mRNA, complete cds blastn 43899 784 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lymnaeidae Lymnaea Lymnaea stagnalis
18774772 18774772 PRJNA942359_P_NODE_19655_length_243_cov_0.917647_g19540_i0 PRJNA942359 19655 243 0.917647 2.22988221 Bradybaena similaris 145626 Mollusca Mollusca 115 2.7500000000000003e-21   NTclustered gi|2913002568|dbj|AP039611.1| 145626 g19540 i0 84.956 0.97119341563786 113 17 47 0 122 234 1153238 1153126 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, sequence_id: unanchored2, sequence blastn 236 115 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
28706009 28706009 PRJNA942359_P_NODE_9147_length_289_cov_1.444444_g9032_i0 PRJNA942359 9147 289 1.444444 4.17444316 Metazoa 33208 Mollusca Mollusca 141 1.62e-41   NR AAM09680.1 6500 g9032 i0 92.7 6.88235294117647 96 7 99.7 0 2 289 3 98 AAM09680.1 ubiquitin/ribosomal S27A fusion protein 3, partial [Aplysia californica] diamond 1989 141 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Aplysiida Aplysiidae Aplysia Aplysia californica

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;