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contig_metadata

25 rows where bioproject = "PRJNA942359", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 25 ✖

tax_kingdom 1

  • Pseudomonadati · 25 ✖

bioproject 1

  • PRJNA942359 · 25 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2198385 2198385 PRJNA942359_P_NODE_282_length_1319_cov_1.707063_g235_i0 PRJNA942359 282 1319 1.707063 22.51616097 Polyangium aurulentum 2567896 Bacteria Bacteria 1618 0   NTclustered gi|2235996827|gb|CP079217.1| 2567896 g235 i0 89.22 150.458680818802 1308 124 98 16 3 1300 444586 443286 Polyangium aurulentum strain SDU3-1 chromosome, complete genome blastn 198455 1618 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium aurulentum
3473829 3473829 PRJNA942359_P_NODE_20683_length_228_cov_2.012903_g20568_i0 PRJNA942359 20683 228 2.012903 4.5894188400000004 Myxococcales bacterium 2026763 Bacteria Bacteria 65.5 2.86e-10   NR MEA2698058.1 2026763 g20568 i0 51.4 1.89473684210526 72 31 93.4 3 6 218 80 148 MEA2698058.1 hypothetical protein [Myxococcales bacterium] diamond 432 65.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
16225925 16225925 PRJNA942359_P_NODE_18393_length_245_cov_0.906977_g18278_i0 PRJNA942359 18393 245 0.906977 2.22209365 Pseudomonadati 3379134 Bacteria Bacteria 154 5.829999999999998e-42   NR MBM4244447.1 2026735 g18278 i0 88.9 1.98367346938776 81 9 99.2 0 3 245 308 388 MBM4244447.1 AMP-binding protein [Deltaproteobacteria bacterium] diamond 486 155 0.993548387096774 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
16226063 16226063 PRJNA942359_P_NODE_7333_length_316_cov_1.283951_g7218_i0 PRJNA942359 7333 316 1.283951 4.05728516 Labilithrix luteola 1391654 Bacteria Bacteria 468 2.48e-127   NTclustered gi|913610804|gb|CP012333.1| 1391654 g7218 i0 93.354 128.78164556962 316 21 100 0 1 316 7090438 7090123 Labilithrix luteola strain DSM 27648, complete genome blastn 40695 468 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
18774699 18774699 PRJNA942359_P_NODE_16215_length_248_cov_0.891429_g16100_i0 PRJNA942359 16215 248 0.891429 2.21074392 Paraliomyxa miuraensis 376150 Bacteria Bacteria 140 1.38e-36   NR WP_266215265.1 376150 g16100 i0 86.6 0.991935483870968 82 11 99.2 0 1 246 498 579 WP_266215265.1 peptidase domain-containing ABC transporter [Paraliomyxa miuraensis] diamond 246 140 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales   Paraliomyxa Paraliomyxa miuraensis
21325182 21325182 PRJNA942359_P_NODE_5037_length_368_cov_1.369492_g4922_i0 PRJNA942359 5037 368 1.369492 5.03973056 Labilithrix luteola 1391654 Bacteria Bacteria 479 1.3499999999999996e-130   NTclustered gi|913610804|gb|CP012333.1| 1391654 g4922 i0 90.986 168.595108695652 355 32 96 0 1 355 3942266 3941912 Labilithrix luteola strain DSM 27648, complete genome blastn 62043 479 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
22599974 22599974 PRJNA942359_P_NODE_16398_length_248_cov_0.891429_g16283_i0 PRJNA942359 16398 248 0.891429 2.21074392 Myxococcota bacterium 2818507 Bacteria Bacteria 82.4 4.24e-16   NR HEY1101541.1 2818507 g16283 i0 51.8 1.00403225806452 83 38 98 1 6 248 27 109 HEY1101541.1 NAD(P)-dependent oxidoreductase [Myxococcota bacterium] diamond 249 82.4 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
22600206 22600206 PRJNA942359_P_NODE_938_length_789_cov_9.963687_g837_i0 PRJNA942359 938 789 9.963687 78.61349043 Sandaracinus amylolyticus 927083 Bacteria Bacteria 490 1.4199999999999997e-133   NTclustered gi|2183633570|gb|CP070225.1| 927083 g837 i0 78.375 359.377693282636 800 142 99 28 4 789 9677146 9676364 Sandaracinus strain MSr10575 (SBSa001) chromosome, complete sequence blastn 283549 490 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus amylolyticus
23875367 23875367 PRJNA942359_P_NODE_13139_length_253_cov_0.866667_g13024_i0 PRJNA942359 13139 253 0.866667 2.19266751 Chondromyces crocatus 52 Bacteria Bacteria 311 3.43e-80   NTclustered gi|169977285|emb|AM946600.1| 52 g13024 i0 88.716 146.177865612648 257 25 100 3 1 253 1535 1791 Chondromyces crocatus ajudazol biosynthesis gene cluster, strain Cmc5 blastn 36983 311 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces crocatus
26645191 26645191 PRJNA942359_P_NODE_19221_length_243_cov_0.917647_g19106_i0 PRJNA942359 19221 243 0.917647 2.22988221 Myxococcales bacterium 2026763 Bacteria Bacteria 82.8 2.8e-16   NR MBX2798093.1 2026763 g19106 i0 54.5 1.92592592592593 77 35 95.1 0 232 2 185 261 MBX2798093.1 DUF1592 domain-containing protein [Myxococcales bacterium] diamond 468 82.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27309922 27309922 PRJNA942359_P_NODE_12223_length_259_cov_1.424731_g12108_i0 PRJNA942359 12223 259 1.424731 3.69005329 Polyangia bacterium 3058050 Bacteria Bacteria 76.3 1.75e-14   NR HEY5284550.1 3058050 g12108 i0 48.1 0.938223938223938 81 42 93.8 0 254 12 115 195 HEY5284550.1 rhomboid family intramembrane serine protease [Polyangia bacterium] diamond 243 76.3 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium
27436321 27436321 PRJNA942359_P_NODE_17823_length_246_cov_0.901734_g17708_i0 PRJNA942359 17823 246 0.901734 2.21826564 Polyangiaceae bacterium 2268199 Bacteria Bacteria 160 1.5899999999999999e-46   NR HWO12203.1 2268199 g17708 i0 93.8 2.96341463414634 81 5 98.8 0 244 2 95 175 HWO12203.1 branched-chain amino acid transaminase [Polyangiaceae bacterium] diamond 729 160 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
27474475 27474475 PRJNA942359_P_NODE_19683_length_243_cov_0.911765_g19568_i0 PRJNA942359 19683 243 0.911765 2.21558895 Pseudomonadati 3379134 Bacteria Bacteria 89 1.98e-19   NR MBM4253237.1 2026735 g19568 i0 60.6 2.49382716049383 66 26 81.5 0 45 242 4 69 MBM4253237.1 serine/threonine protein kinase [Deltaproteobacteria bacterium] diamond 606 89.4 0.995525727069351 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28256859 28256859 PRJNA942359_P_NODE_17446_length_246_cov_0.901734_g17331_i0 PRJNA942359 17446 246 0.901734 2.21826564 Polyangiales bacterium 3034171 Bacteria Bacteria 73.6 5.13e-13   NR MEZ4391738.1 3034171 g17331 i0 47.4 0.951219512195122 78 41 95.1 0 242 9 71 148 MEZ4391738.1 rhodanese-like domain-containing protein [Polyangiales bacterium] diamond 234 73.6 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium
28667648 28667648 PRJNA942359_P_NODE_14627_length_250_cov_3.559322_g14512_i0 PRJNA942359 14627 250 3.559322 8.898305 Myxococcales bacterium 2026763 Bacteria Bacteria 134 3.1500000000000004e-36   NR MBL8948582.1 2026763 g14512 i0 77.1 0.996 83 19 99.6 0 250 2 104 186 MBL8948582.1 hypothetical protein [Myxococcales bacterium] diamond 249 134 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
29551366 29551366 PRJNA942359_P_NODE_13810_length_252_cov_0.871508_g13695_i0 PRJNA942359 13810 252 0.871508 2.19620016 Myxococcaceae bacterium 2484252 Bacteria Bacteria 95.9 8.390000000000001e-21   NR MDB4994821.1 2484252 g13695 i0 69.7 1.79761904761905 76 23 90.5 0 1 228 20 95 MDB4994821.1 two-component hybrid sensor and regulator [Myxococcaceae bacterium] diamond 453 95.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
29551367 29551367 PRJNA942359_P_NODE_16470_length_248_cov_0.891429_g16355_i0 PRJNA942359 16470 248 0.891429 2.21074392 Polyangiales bacterium 3034171 Bacteria Bacteria 117 8.61e-29   NR HET8938335.1 3034171 g16355 i0 87.3 0.762096774193548 63 8 76.2 0 191 3 1 63 HET8938335.1 FAD-binding oxidoreductase [Polyangiales bacterium] diamond 189 117 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium
30530679 30530679 PRJNA942359_P_NODE_3733_length_416_cov_0.909621_g3618_i0 PRJNA942359 3733 416 0.909621 3.78402336 Polyangiales bacterium 3034171 Bacteria Bacteria 174 3.42e-52   NR MFT5359428.1 3034171 g3618 i0 85.3 1.47115384615385 102 15 73.6 0 111 416 1 102 MFT5359428.1 rhodanese-related sulfurtransferase [Polyangiales bacterium] diamond 612 174 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium
30625409 30625409 PRJNA942359_P_NODE_18073_length_245_cov_0.906977_g17958_i0 PRJNA942359 18073 245 0.906977 2.22209365 Myxococcales bacterium 2026763 Bacteria Bacteria 65.9 2.65e-10   NR HEX4385086.1 2026763 g17958 i0 46.3 2.17959183673469 80 39 93.1 2 16 243 185 264 HEX4385086.1 hypothetical protein [Myxococcales bacterium] diamond 534 65.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
30948541 30948541 PRJNA942359_P_NODE_9154_length_289_cov_1.444444_g9039_i0 PRJNA942359 9154 289 1.444444 4.17444316 Polyangium 55 Bacteria Bacteria 56.6 1.24e-7   NR HVK65902.1 57 g9039 i0 59.1 0.913494809688581 44 18 45.7 0 257 126 89 132 HVK65902.1 AgmX/PglI C-terminal domain-containing protein [Polyangium sp.] diamond 264 56.6 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium sp.
31099365 31099365 PRJNA942359_P_NODE_6515_length_332_cov_1.135135_g6400_i0 PRJNA942359 6515 332 1.135135 3.7686482 Myxococcus 32 Bacteria Bacteria 152 1.64e-41   NR WP_194869637.1 32 g6400 i0 77.3 1.75301204819277 97 21 87.7 1 40 330 313 408 WP_194869637.1 MULTISPECIES: IS4 family transposase [Myxococcus] diamond 582 152 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus  
31700384 31700384 PRJNA942359_P_NODE_13277_length_253_cov_0.866667_g13162_i0 PRJNA942359 13277 253 0.866667 2.19266751 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 94.4 2.64e-20   NR MBK6684412.1 2026735 g13162 i0 50 1.94466403162055 82 40 96 1 244 2 381 462 MBK6684412.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 492 94.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32175104 32175104 PRJNA942359_P_NODE_13158_length_253_cov_0.866667_g13043_i0 PRJNA942359 13158 253 0.866667 2.19266751 Polyangiaceae bacterium 2268199 Bacteria Bacteria 94.4 2.97e-20   NR HEY2513141.1 2268199 g13043 i0 61.4 3.81818181818182 70 27 83 0 210 1 221 290 HEY2513141.1 prolyl oligopeptidase family serine peptidase [Polyangiaceae bacterium] diamond 966 94.4 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
32238481 32238481 PRJNA942359_P_NODE_16098_length_248_cov_0.891429_g15983_i0 PRJNA942359 16098 248 0.891429 2.21074392 Myxococcota bacterium 2818507 Bacteria Bacteria 50.4 6.79e-5   NR MEE3327382.1 2818507 g15983 i0 62.9 0.846774193548387 35 13 42.3 0 248 144 253 287 MEE3327382.1 MOSC domain-containing protein [Myxococcota bacterium] diamond 210 50.4 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
32238485 32238485 PRJNA942359_P_NODE_17078_length_247_cov_0.896552_g16963_i0 PRJNA942359 17078 247 0.896552 2.21448344 Myxococcales bacterium 2026763 Bacteria Bacteria 115 1.59e-28   NR MBL9107777.1 2026763 g16963 i0 73.1 0.947368421052632 78 21 94.7 0 12 245 324 401 MBL9107777.1 tyrosine--tRNA ligase [Myxococcales bacterium] diamond 234 115 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;