contig_metadata
9 rows where bioproject = "PRJNA942359" and tax_kingdom = "Methanobacteriati"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10187546 | 10187546 | PRJNA942359_P_NODE_20768_length_207_cov_4.455224_g20653_i0 | PRJNA942359 | 20768 | 207 | 4.455224 | 9.22231368 | Methanosarcina | 2207 | Archaea | Archaea | 383 | 5.65e-102 | NTclustered | gi|827396966|gb|CP008746.1| | 796385 | g20653 | i0 | 100 | 40.9227053140097 | 207 | 0 | 100 | 0 | 1 | 207 | 4158541 | 4158747 | Methanosarcina barkeri CM1, complete genome | blastn | 8471 | 383 | 1 | Archaea | Stenosarchaea group | Methanobacteriati | Methanobacteriota | Methanomicrobia | Methanosarcinales | Methanosarcinaceae | Methanosarcina | Methanosarcina barkeri | |
| 22599965 | 22599965 | PRJNA942359_P_NODE_16058_length_248_cov_0.891429_g15943_i0 | PRJNA942359 | 16058 | 248 | 0.891429 | 2.21074392 | Methanothrix sp. | 90426 | Archaea | Archaea | 436 | 5.3e-118 | NTclustered | gi|2621703957|emb|OY762912.1| | 90426 | g15943 | i0 | 98.387 | 1 | 248 | 4 | 100 | 0 | 1 | 248 | 1275697 | 1275944 | MAG: Methanothrix sp. isolate 80880379-7421-4bc7-b5fd-f9f5169ec620 genome assembly, chromosome: 1 | blastn | 248 | 436 | 1 | Archaea | Stenosarchaea group | Methanobacteriati | Methanobacteriota | Methanomicrobia | Methanotrichales | Methanotrichaceae | Methanothrix | Methanothrix sp. | |
| 22599976 | 22599976 | PRJNA942359_P_NODE_16438_length_248_cov_0.891429_g16323_i0 | PRJNA942359 | 16438 | 248 | 0.891429 | 2.21074392 | Candidatus Methanoperedens sp. | 2032688 | Archaea | Archaea | 134 | 8.34e-35 | NR | HWR96842.1 | 2032688 | g16323 | i0 | 85.4 | 0.991935483870968 | 82 | 12 | 99.2 | 0 | 1 | 246 | 261 | 342 | HWR96842.1 DHA2 family efflux MFS transporter permease subunit [Candidatus Methanoperedens sp.] | diamond | 246 | 134 | 1 | Archaea | Stenosarchaea group | Methanobacteriati | Methanobacteriota | Methanomicrobia | Methanosarcinales | Candidatus Methanoperedentaceae | Candidatus Methanoperedens | Candidatus Methanoperedens sp. | |
| 25485403 | 25485403 | PRJNA942359_P_NODE_20220_length_242_cov_0.923077_g20105_i0 | PRJNA942359 | 20220 | 242 | 0.923077 | 2.23384634 | Methanosarcina | 2207 | Archaea | Archaea | 448 | 2.3799999999999995e-121 | NTclustered | gi|827396966|gb|CP008746.1| | 796385 | g20105 | i0 | 100 | 12 | 242 | 0 | 100 | 0 | 1 | 242 | 4371282 | 4371041 | Methanosarcina barkeri CM1, complete genome | blastn | 2904 | 448 | 1 | Archaea | Stenosarchaea group | Methanobacteriati | Methanobacteriota | Methanomicrobia | Methanosarcinales | Methanosarcinaceae | Methanosarcina | Methanosarcina barkeri | |
| 27948131 | 27948131 | PRJNA942359_P_NODE_14325_length_251_cov_0.876404_g14210_i0 | PRJNA942359 | 14325 | 251 | 0.876404 | 2.19977404 | root | 1 | Root_unresolved | Root_unresolved | 98.6 | 4.04e-22 | NR | WP_048038854.1 | 2209 | g14210 | i0 | 56.6 | 5.85657370517928 | 83 | 36 | 99.2 | 0 | 249 | 1 | 274 | 356 | WP_048038854.1 restriction endonuclease subunit S [Methanosarcina mazei] | diamond | 1470 | 99 | 0.995959595959596 | Archaea | Stenosarchaea group | Methanobacteriati | Methanobacteriota | Methanomicrobia | Methanosarcinales | Methanosarcinaceae | Methanosarcina | Methanosarcina mazei | |
| 28320125 | 28320125 | PRJNA942359_P_NODE_14446_length_251_cov_0.876404_g14331_i0 | PRJNA942359 | 14446 | 251 | 0.876404 | 2.19977404 | Candidatus Methanoperedens sp. | 2032688 | Archaea | Archaea | 142 | 6.51e-39 | NR | HWR98640.1 | 2032688 | g14331 | i0 | 81.7 | 0.9800796812749 | 82 | 15 | 98 | 0 | 1 | 246 | 120 | 201 | HWR98640.1 DHH family phosphoesterase [Candidatus Methanoperedens sp.] | diamond | 246 | 142 | 1 | Archaea | Stenosarchaea group | Methanobacteriati | Methanobacteriota | Methanomicrobia | Methanosarcinales | Candidatus Methanoperedentaceae | Candidatus Methanoperedens | Candidatus Methanoperedens sp. | |
| 30530673 | 30530673 | PRJNA942359_P_NODE_15773_length_249_cov_0.886364_g15658_i0 | PRJNA942359 | 15773 | 249 | 0.886364 | 2.20704636 | Methanobrevibacter gottschalkii | 190974 | Archaea | Archaea | 145 | 1.54e-40 | NR | WP_091698890.1 | 190974 | g15658 | i0 | 81.9 | 3 | 83 | 15 | 100 | 0 | 1 | 249 | 119 | 201 | WP_091698890.1 CPBP family intramembrane glutamic endopeptidase [Methanobrevibacter gottschalkii] | diamond | 747 | 145 | 1 | Archaea | Methanomada group | Methanobacteriati | Methanobacteriota | Methanobacteria | Methanobacteriales | Methanobacteriaceae | Methanobrevibacter | Methanobrevibacter gottschalkii | |
| 30973254 | 30973254 | PRJNA942359_P_NODE_14314_length_251_cov_0.876404_g14199_i0 | PRJNA942359 | 14314 | 251 | 0.876404 | 2.19977404 | Haloferax | 2251 | Archaea | Archaea | 52.8 | 1.23e-5 | NR | WP_151114281.1 | 2251 | g14199 | i0 | 36.3 | 1.60159362549801 | 80 | 35 | 95.6 | 2 | 243 | 4 | 726 | 789 | WP_151114281.1 MULTISPECIES: PD-(D/E)XK nuclease family protein [Haloferax] | diamond | 402 | 52.8 | 1 | Archaea | Stenosarchaea group | Methanobacteriati | Methanobacteriota | Halobacteria | Halobacteriales | Haloferacaceae | Haloferax | ||
| 32774966 | 32774966 | PRJNA942359_P_NODE_15660_length_249_cov_0.886364_g15545_i0 | PRJNA942359 | 15660 | 249 | 0.886364 | 2.20704636 | Methanothrix sp. | 90426 | Archaea | Archaea | 143 | 1.59e-38 | NR | MBP8623374.1 | 90426 | g15545 | i0 | 83.1 | 1 | 83 | 14 | 100 | 0 | 249 | 1 | 57 | 139 | MBP8623374.1 anthranilate synthase component I [Methanothrix sp.] | diamond | 249 | 143 | 1 | Archaea | Stenosarchaea group | Methanobacteriati | Methanobacteriota | Methanomicrobia | Methanotrichales | Methanotrichaceae | Methanothrix | Methanothrix sp. |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;