RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA942359", tax_kingdom = "Fusobacteriati" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 2 ✖

bioproject 1

  • PRJNA942359 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19110213 19110213 PRJNA942359_P_NODE_5015_length_369_cov_1.054054_g4900_i0 PRJNA942359 5015 369 1.054054 3.88945926 Cetobacterium 180162 Bacteria Bacteria 654 0   NTclustered gi|2865368125|gb|CP122294.1| 188913 g4900 i0 98.645 515.029810298103 369 5 100 0 1 369 279206 279574 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 190046 654 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
20049622 20049622 PRJNA942359_P_NODE_19416_length_243_cov_0.917647_g19301_i0 PRJNA942359 19416 243 0.917647 2.22988221 Cetobacterium somerae 188913 Bacteria Bacteria 294 3.3e-75   NTclustered gi|2201062197|gb|CP092519.1| 188913 g19301 i0 88.477 5 243 28 100 0 1 243 1523673 1523915 Cetobacterium somerae strain CS2105-BJ chromosome, complete genome blastn 1215 294 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;