RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA942359" and tax_clade = "delta/epsilon subdivisions"

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analysis 2

tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA942359 · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13676528 13676528 PRJNA942359_P_NODE_11651_length_264_cov_1.633508_g11536_i0 PRJNA942359 11651 264 1.633508 4.31246112 uncultured delta proteobacterium 34034 Bacteria Bacteria 460 3.3799999999999995e-125   NTclustered gi|326537656|gb|JF319226.1| 34034 g11536 i0 98.106 100.128787878788 264 5 100 0 1 264 276 13 Uncultured delta proteobacterium clone LJ-J37 16S ribosomal RNA gene, partial sequence blastn 26434 460 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
26842385 26842385 PRJNA942359_P_NODE_14901_length_250_cov_0.881356_g14786_i0 PRJNA942359 14901 250 0.881356 2.20339 Bacteria 2 Bacteria Bacteria 147 4.37e-39   NR OGQ02804.1 1797854 g14786 i0 93.5 1.848 77 5 92.4 0 249 19 736 812 OGQ02804.1 MAG: translation initiation factor IF-2 [Deltaproteobacteria bacterium RBG_19FT_COMBO_58_16] diamond 462 148 0.993243243243243 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_19FT_COMBO_58_16

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;