RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA942359", tax_clade = "Opisthokonta" and tax_phylum = "Echinodermata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA942359 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
922849 922849 PRJNA942359_P_NODE_12821_length_253_cov_1.788889_g12706_i0 PRJNA942359 12821 253 1.788889 4.52588917 Holothuria leucospilota 206669 Echinodermata other_Eukaryota 125 2.98e-35   NR KAJ8029990.1 206669 g12706 i0 100 0.770750988142292 65 0 77.1 0 253 59 29 93 KAJ8029990.1 hypothetical protein HOLleu_29549 [Holothuria leucospilota] diamond 195 125 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota
12402017 12402017 PRJNA942359_P_NODE_12690_length_254_cov_2.812155_g12575_i0 PRJNA942359 12690 254 2.812155 7.1428737 Pteraster pulvillus 335715 Echinodermata other_Eukaryota 361 3.369999999999999e-95   NTclustered gi|82623462|gb|DQ273721.1| 335715 g12575 i0 94.783 2.41732283464567 230 6 89 6 1 226 153 380 Pteraster pulvillus isolate 2 28S ribosomal RNA gene, partial sequence blastn 614 361 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Velatida Pterasteridae Pteraster Pteraster pulvillus
17501250 17501250 PRJNA942359_P_NODE_3634_length_420_cov_0.997118_g3519_i0 PRJNA942359 3634 420 0.997118 4.1878956 Holothuria sanctori 491806 Echinodermata other_Eukaryota 726 0   NTclustered gi|1059433196|dbj|LC177083.1| 491806 g3519 i0 97.857 33.9309523809524 420 9 100 0 1 420 688 269 Holothuria sanctori mitochondrial gene for 28S ribosomal RNA, partial sequence, isolate: Hsa-16S7 blastn 14251 726 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria sanctori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;